CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019987_P001	Maize	cytosol	86.55	86.94
Zm00001d005534_P001	Maize	nucleus	71.97	86.06
Os09t0293900-01	Rice	nucleus	60.54	63.68
TraesCS5A01G158900.1	Wheat	nucleus	59.42	61.34
TraesCS5B01G156700.1	Wheat	nucleus	59.42	61.2
TraesCS5D01G164000.1	Wheat	nucleus	59.19	60.97
HORVU5Hr1G049560.12	Barley	nucleus	56.95	54.98
EES10880	Sorghum	nucleus	35.87	32.0
CDY27659	Canola	plastid	32.51	31.05
Bra025447.1-P	Field mustard	plastid	32.29	31.03
GSMUA_Achr3P07930_001	Banana	nucleus	42.15	30.27
VIT_19s0093g00480.t01	Wine grape	nucleus	36.55	29.37
CDX99700	Canola	endoplasmic reticulum, vacuole	32.29	28.97
EER99137	Sorghum	endoplasmic reticulum	9.64	28.86
Solyc01g091340.2.1	Tomato	nucleus	35.43	28.68
PGSC0003DMT400033263	Potato	nucleus	34.98	28.26
AT3G12340.1	Thale cress	nucleus	30.94	27.66
KRG89916	Soybean	nucleus	35.2	26.12
EES04100	Sorghum	endoplasmic reticulum	8.97	25.81
CDY61640	Canola	nucleus	20.63	24.86
CDY11786	Canola	cytosol	14.13	24.42
EES15264	Sorghum	plastid	11.66	21.49
KXG30740	Sorghum	plastid	10.09	19.91
Solyc02g005290.2.1	Tomato	nucleus	18.61	16.02
PGSC0003DMT400037664	Potato	mitochondrion	9.42	15.0
OQU76834	Sorghum	mitochondrion, plastid	9.42	14.79

Protein Annotations

MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	UniProt:A0A1B6QBM8	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR001179	EnsemblPlants:KXG35300	ProteinID:KXG35300	ProteinID:KXG35300.1	PFAM:PF00254
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF16	EnsemblPlantsGene:SORBI_3002G155200
SUPFAM:SSF54534	UniParc:UPI00081AE736	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:47160024..47163589

Molecular Weight (calculated)

49353.7 Da

IEP (calculated)

6.103

GRAVY (calculated)

-0.829

Length

446 amino acids

Sequence
(BLAST)

001: MAFWGVEVKP GKPYTHTHQA DHGRLRICQA TLGNCDAAAR TVLQCNVGNK IPIKLCSLNP KLAETCHLEI EFEEVDDVVF SVIGQSSIHL SGYYVRASSR
101: SNVGDDESES YGEDIGHSDT DEEHDASEDS YESDFIDDRE VPTPEKYGSD SIDDSDYECT LRRRRKQKAV EKPTQKAERR RRLKKHQVDS TDDNYDDTPV
201: TKPVVKRSAK IFDSGDDDTP VTKPVDKRSA PSMFDSSSDE DDNVPISLAL GKKDNAKVAE ETDPQNGQAN DITKKKIVDV KKRKHSAISE DPALSMDTTD
301: VNATSVSKQG DEIKKKSKKK MKNQSGEKDE KQSNIRTLED GLMVEDLSIG NIDAKVASDG CKVYIKYVGM LKNGKIVQSN ASEKPYKFKL GAGKVIRGWD
401: VGIRGMRVGE KRKVTVPPSM LSGGKSVGEV PDNSSVIYEI ELVKVK

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.