Factsheet for PGSC0003DMT400033263

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091340.2.1	Tomato	nucleus	95.11	95.28
VIT_19s0093g00480.t01	Wine grape	nucleus	43.12	42.88
PGSC0003DMT400079626	Potato	nucleus	33.7	38.35
Os09t0293900-01	Rice	nucleus	27.17	35.38
KXG35300	Sorghum	nucleus	28.26	34.98
TraesCS5D01G164000.1	Wheat	nucleus	27.17	34.64
TraesCS5B01G156700.1	Wheat	nucleus	27.17	34.64
TraesCS5A01G158900.1	Wheat	nucleus	26.99	34.49
Zm00001d019987_P001	Maize	cytosol	27.54	34.23
GSMUA_Achr3P07930_001	Banana	nucleus	37.86	33.66
PGSC0003DMT400022512	Potato	extracellular	8.88	32.89
Zm00001d005534_P001	Maize	nucleus	21.74	32.17
HORVU5Hr1G049560.12	Barley	nucleus	25.72	30.74
PGSC0003DMT400056671	Potato	plastid	9.42	24.88
PGSC0003DMT400067618	Potato	cytosol, plastid	10.14	24.78
Os09t0103800-00	Rice	cytosol	20.65	21.92
PGSC0003DMT400037664	Potato	mitochondrion	10.33	20.36
PGSC0003DMT400038848	Potato	plastid	7.61	17.87

Protein Annotations

EntrezGene:102578696	MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	ncoils:Coil	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179	UniProt:M1AYV7	PFAM:PF00254
EnsemblPlantsGene:PGSC0003DMG400012775	PGSC:PGSC0003DMG400012775	EnsemblPlants:PGSC0003DMT400033263	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059
PANTHER:PTHR43811	PANTHER:PTHR43811:SF7	SUPFAM:SSF54534	UniParc:UPI000296AFDF	RefSeq:XP_006339431.1	SEG:seg

Description

Caldesmon [Source:PGSC_GENE;Acc:PGSC0003DMG400012775]

Coordinates

chr1:+:70729284..70737764

Molecular Weight (calculated)

60597.5 Da

IEP (calculated)

5.099

GRAVY (calculated)

-0.871

Length

552 amino acids

Sequence
(BLAST)

001: MAFWGIEVKA GKPVTHSSNN ERGRLRISQA TLGIGNAETK SLVQCNVGNK SPVFLCALLP NKTESCHLDL EFEEAEDVVF SVLGPRTVYL TGYYVGNSRR
101: ANVNSDTESY GEDIADTETG ESCHDSDDDK YDDSFINDAE PEISPPSPAS SSGVQEDDEN VSDNKLNNNN GGNKRLRKKY QVSESENEDI LQESDDEDSC
201: LLSALKKKTD VKAVASEDNQ KIDIPYRTEN GGTVESKKAK HENSINSKKK RKQPEGNGGK LLEANTSSDK KDYKEDKTKL VDVGLAMTID MKDGQSDTLE
301: PLAEEDSNHV PKSKKRKHSV EAKSVENHDT DSAVILKEDQ LKQDPLKAGH LGEDPIAIAI DEEDQKLTIN NSSVDGKSDS VADGHQSDKK LKKKKKKKTK
401: TQDDCLVNRD LPVLQENEMN RQSVDVEDKS LKVKSTVIKT LSNGLTIEEL AVGEPGGKLA APGKKIKVHY TGKLKENGQI FYTNMGKSPY KFRLGDKDVI
501: EGWNLGLAGM RVGDKRRLTV PPSIGYGSEG AGENIPPNSW LVFDIELIGV RG

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.