Factsheet for PGSC0003DMT400067618

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 9
vacuole 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006540.2.1	Tomato	plastid	96.9	83.27
CDY62066	Canola	endoplasmic reticulum	52.21	64.48
AT5G45680.1	Thale cress	plastid	56.64	61.54
VIT_01s0011g00930.t01	Wine grape	plastid	58.41	61.11
Bra017596.1-P	Field mustard	plastid	55.31	60.39
CDY13042	Canola	plastid	55.31	60.39
KRH42434	Soybean	plastid	56.19	58.8
TraesCS7D01G472600.1	Wheat	plastid	45.13	50.25
TraesCS7B01G388800.1	Wheat	plastid	45.13	50.25
TraesCS7A01G485300.1	Wheat	plastid	44.69	49.75
Zm00001d046940_P001	Maize	plastid	46.02	48.83
GSMUA_Achr8P06890_001	Banana	plastid	48.23	48.66
Os06t0663800-01	Rice	extracellular	46.46	48.17
HORVU7Hr1G109380.4	Barley	plastid	43.36	45.37
PGSC0003DMT400056671	Potato	plastid	35.4	38.28
PGSC0003DMT400022512	Potato	extracellular	23.89	36.24
OQU76834	Sorghum	mitochondrion, plastid	45.13	35.92
PGSC0003DMT400038848	Potato	plastid	24.78	23.83
PGSC0003DMT400079626	Potato	nucleus	26.11	12.16
PGSC0003DMT400033263	Potato	nucleus	24.78	10.14
PGSC0003DMT400037664	Potato	mitochondrion	7.08	5.71

Protein Annotations

EntrezGene:102585410	MapMan:18.12.2	Gene3D:3.10.50.40	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	GO:GO:0031977	InterPro:IPR001179	UniProt:M1CHK3	PFAM:PF00254
EnsemblPlantsGene:PGSC0003DMG400026290	PGSC:PGSC0003DMG400026290	EnsemblPlants:PGSC0003DMT400067618	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059
PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	UniParc:UPI0002968237	RefSeq:XP_006357064.1	SEG:seg

Description

FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400026290]

Coordinates

chr8:+:2041255..2046831

Molecular Weight (calculated)

24081.1 Da

IEP (calculated)

8.355

GRAVY (calculated)

0.042

Length

226 amino acids

Sequence
(BLAST)

001: MNSIPFSIVT YIPSKQPLLL CTKNSQTTTD PIPHFIKSSI LSSSSKSVNK LAETISPLSF SFSRRETLSA CGLGFSAILF EALLQPQSNI EAIAEEAAAT
101: ECEFTVTPSG LAYCDKVVGY GPEAVKGQLI KAHYVGKLEN GKVFDSSYNR GKPLTFRVGV GEVIKGWDQG ILGGDGFPPM LTGGKRKLKI PPELGYGIRG
201: AGCRGGTCII PPDSVLLFDV EFVGKA

Best Arabidopsis Sequence Match ( AT5G45680.1 )
(BLAST)

001: MSSLGFSVGT CSPPSEKRKC RFLVNNSLNK AEAINLRNKQ KVSSDPELSF AQLSSCGRRE AIIGFGFSIG LLDNVSALAE TTSCEFSVSP SGLAFCDKVV
101: GYGPEAVKGQ LIKAHYVGKL ENGKVFDSSY NRGKPLTFRI GVGEVIKGWD QGILGSDGIP PMLTGGKRTL RIPPELAYGD RGAGCKGGSC LIPPASVLLF
201: DIEYIGKA

Arabidopsis Description

FKBP13Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.