CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62066	Canola	endoplasmic reticulum	53.24	62.84
VIT_01s0011g00930.t01	Wine grape	plastid	58.8	58.8
Bra017596.1-P	Field mustard	plastid	56.02	58.45
CDY13042	Canola	plastid	56.02	58.45
AT5G45680.1	Thale cress	plastid	55.56	57.69
PGSC0003DMT400067618	Potato	cytosol, plastid	58.8	56.19
Zm00001d046940_P001	Maize	plastid	52.78	53.52
GSMUA_Achr8P06890_001	Banana	plastid	53.24	51.34
Os06t0663800-01	Rice	extracellular	50.93	50.46
TraesCS7B01G388800.1	Wheat	plastid	46.76	49.75
TraesCS7A01G485300.1	Wheat	plastid	46.3	49.26
Solyc08g006540.2.1	Tomato	plastid	59.72	49.05
TraesCS7D01G472600.1	Wheat	plastid	45.83	48.77
HORVU7Hr1G109380.4	Barley	plastid	45.37	45.37
OQU76834	Sorghum	mitochondrion, plastid	50.0	38.03
KRH43236	Soybean	nucleus	36.57	37.8
KRH59400	Soybean	extracellular, vacuole	25.0	34.18
KRH66149	Soybean	endoplasmic reticulum	22.69	33.33
KRH07427	Soybean	endoplasmic reticulum	23.15	32.47
KRH29576	Soybean	plastid	27.31	25.43
KRH24569	Soybean	plastid	27.31	25.43
KRH77741	Soybean	nucleus	28.7	12.33
KRH27794	Soybean	nucleus	28.7	12.33
KRG89916	Soybean	nucleus	25.0	8.99

Protein Annotations

EntrezGene:100778390	MapMan:18.12.2	Gene3D:3.10.50.40	EMBL:ACUP02004804	EMBL:BT096440	UniProt:C6TFQ0
EnsemblPlantsGene:GLYMA_08G089700	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	GO:GO:0031977	GO:GO:0061077	InterPro:IPR001179	EnsemblPlants:KRH42434
ProteinID:KRH42434	ProteinID:KRH42434.1	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059
PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	UniParc:UPI0001B16772	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:6777521..6780488

Molecular Weight (calculated)

22845.8 Da

IEP (calculated)

9.090

GRAVY (calculated)

0.022

Length

216 amino acids

Sequence
(BLAST)

001: MGLVAPYSAG TCLPSLQRLP TLQAQKWNNF SAPLSCHRQV KCAVQVQPQV APRITPDESL QVKRRTLIGL LAFDAVLAYS SLQAAPAAEN PCEFQVAPSG
101: LAFCDKLVGA GPQAVKGQLI KAHYVGRLEN GKVFDSSYNR GKPLTFRVGV GEVIKGWDEG IIGGDGVPPM LAGGKRTLKI PPELGYGSRG AGCRGGSCII
201: PPDSVLLFDV EFVSKA

Best Arabidopsis Sequence Match ( AT5G45680.1 )
(BLAST)

001: MSSLGFSVGT CSPPSEKRKC RFLVNNSLNK AEAINLRNKQ KVSSDPELSF AQLSSCGRRE AIIGFGFSIG LLDNVSALAE TTSCEFSVSP SGLAFCDKVV
101: GYGPEAVKGQ LIKAHYVGKL ENGKVFDSSY NRGKPLTFRI GVGEVIKGWD QGILGSDGIP PMLTGGKRTL RIPPELAYGD RGAGCKGGSC LIPPASVLLF
201: DIEYIGKA

Arabidopsis Description

FKBP13Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.