CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0093g00480.t01	Wine grape	nucleus	38.77	41.98
Bra025447.1-P	Field mustard	plastid	28.95	37.5
AT3G12340.1	Thale cress	nucleus	30.95	37.27
CDY27659	Canola	plastid	28.95	37.26
TraesCS5A01G158900.1	Wheat	nucleus	26.29	36.57
Zm00001d019987_P001	Maize	cytosol	26.79	36.26
TraesCS5D01G164000.1	Wheat	nucleus	26.12	36.26
TraesCS5B01G156700.1	Wheat	nucleus	25.79	35.8
KRH77741	Soybean	nucleus	29.95	35.79
CDX99700	Canola	endoplasmic reticulum, vacuole	29.12	35.21
KXG35300	Sorghum	nucleus	26.12	35.2
KRH27794	Soybean	nucleus	29.45	35.19
Os09t0293900-01	Rice	nucleus	24.46	34.67
Zm00001d005534_P001	Maize	nucleus	20.47	32.98
CDY61640	Canola	nucleus	19.97	32.43
HORVU5Hr1G049560.12	Barley	nucleus	24.79	32.25
GSMUA_Achr3P07930_001	Banana	nucleus	32.45	31.4
KRH66149	Soybean	endoplasmic reticulum	7.65	31.29
KRH07427	Soybean	endoplasmic reticulum	7.99	31.17
KRH43236	Soybean	nucleus	8.99	25.84
KRH42434	Soybean	plastid	8.99	25.0
Os09t0103800-00	Rice	cytosol	20.13	23.27
KRH29576	Soybean	plastid	8.32	21.55
KRH59400	Soybean	extracellular, vacuole	5.66	21.52
KRH24569	Soybean	plastid	8.15	21.12
Solyc02g005290.2.1	Tomato	nucleus	16.81	19.5
PGSC0003DMT400037664	Potato	mitochondrion	8.15	17.5

Protein Annotations

EntrezGene:100798135	MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	EMBL:ACUP02012309	ncoils:Coil
EnsemblPlantsGene:GLYMA_20G055800	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179
UniProt:K7KKC8	EnsemblPlants:KRG89916	ProteinID:KRG89916	ProteinID:KRG89916.1	PFAM:PF00254	InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF7	SUPFAM:SSF54534	UniParc:UPI0002958220
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:13236627..13243155

Molecular Weight (calculated)

66682.5 Da

IEP (calculated)

4.926

GRAVY (calculated)

-0.917

Length

601 amino acids

Sequence
(BLAST)

001: MAFWGVEVKP GKPFSHKHDP SKGRLHISMG TLGLGTAIAK STLQCNVGNR SPVYLCSLYP GKTESLQLNL ELEEVDETVV FSVIGPRSIH LCGYYLVTAR
101: NSNLVDDSES FGEDIADTET EKSDYSEDEY DDSFIDDDGV PEAFLPSPIS EEEEASHDSR EKGRKGSLRR LRKKYQSVES DDDGRHEEKI IADDSMDDQT
201: QEIKDDEDIL PISSLYKNKA SQRVLDEEMD ASVDRQAGDA SNKNGEDGGN SIVETNLKAD HDLVDSQTLR EAQPSNHLVD PCIVLDVGDI KNLKKKKKRK
301: GKEIDSSSND HSIKLDSGIG GEPKMEKMTQ DFVAGNKQQQ HDDDKDANIS GNVALPSADT GPKKNRTKKK KKEQVNKSDN GYQEGIIQED KAKRDAAESQ
401: NLIHKVFAEK ELHENLTNEK SVDNGAHEFP DGNLSDDRKV KKRKKMSKSP GNGEVANSDM PVSVEQSGET EMMEEDRNKR EDAKPSQVRT LANGLVIQEL
501: EKGRQDGKIA ALGKKISIYY TGKMKEDGVV FASNAGQAPY KFRLGKGKVI EGWDVGLEGM QVGEKRRLVI PPSLTSESDE HCAKIPPNSW LVYDFELVKV
601: H

Best Arabidopsis Sequence Match ( AT3G12340.1 )
(BLAST)

001: MAFWGVEVKP GKTFTLKNNE ATGIRRLHLS QATLGHGTAT NRSILQCNVG NKSPLLLCVL TPDKVDSCQL NLEFEETDEV IFSVIGPRSV HLTGYFLGRS
101: TGFRPNDDES ESFGEDIVDT DMEKGSSDDY DYSDSFINDD DPAVRGSHVS STDDDEISIK EMTAKTKEKK KNGKGRRLRK KFQVSDSDSD ETSARADESS
201: NEDSVEVLNN GNEPKIAKVH SSESPLPSRV TRSKARKSTL ESGEPAKCEK TFEAKINTHK TLDNREDKPL DDAKLSPVQK DCEILSKKKR NKERSKSSAI
301: IIDSDDGEGK NMPESLQNEN PVSDKGIKSS SDVLLSQNGD ATLSKKKKKR DRREETTDVP ECPEKKKQAI DKNIEKEAGT KKPLETRTLS NGVIIEDIEK
401: GKLDGKSAVK GKKVSILYTG KLKDTGNLFD SNLGEDPLRF RLGGENVIEG LSIGVEGMRV GDKRRLIIPP ALGYSKRGLK EKVPKSAWLV YEVEAVKIR

Arabidopsis Description

FKBP43Peptidyl-prolyl cis-trans isomerase FKBP43 [Source:UniProtKB/Swiss-Prot;Acc:F4J9Q6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.