Factsheet for PGSC0003DMT400037664

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g005290.2.1	Tomato	nucleus	80.0	43.24
PGSC0003DMT400079626	Potato	nucleus	18.57	10.72
VIT_19s0093g00480.t01	Wine grape	nucleus	21.07	10.63
TraesCS5D01G164000.1	Wheat	nucleus	16.07	10.39
PGSC0003DMT400033263	Potato	nucleus	20.36	10.33
TraesCS5A01G158900.1	Wheat	nucleus	15.71	10.19
Zm00001d019987_P001	Maize	cytosol	16.07	10.14
TraesCS5B01G156700.1	Wheat	nucleus	15.36	9.93
Bra025447.1-P	Field mustard	plastid	16.43	9.91
Os09t0293900-01	Rice	nucleus	15.0	9.91
CDY27659	Canola	plastid	16.43	9.85
KXG35300	Sorghum	nucleus	15.0	9.42
Zm00001d005534_P001	Maize	nucleus	12.5	9.38
CDX99700	Canola	endoplasmic reticulum, vacuole	16.43	9.26
CDY61640	Canola	nucleus	12.14	9.19
GSMUA_Achr3P07930_001	Banana	nucleus	20.0	9.02
AT3G12340.1	Thale cress	nucleus	15.0	8.42
KRG89916	Soybean	nucleus	17.5	8.15
Os09t0103800-00	Rice	cytosol	14.64	7.88
HORVU5Hr1G049560.12	Barley	nucleus	12.86	7.79
PGSC0003DMT400067618	Potato	cytosol, plastid	5.71	7.08
PGSC0003DMT400056671	Potato	plastid	5.0	6.7
PGSC0003DMT400022512	Potato	extracellular	2.5	4.7
PGSC0003DMT400038848	Potato	plastid	2.86	3.4

Protein Annotations

EnsemblPlants:PGSC0003DMT400037664	EnsemblPlantsGene:PGSC0003DMG400014527	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	PANTHER:PTHR31662	PFAM:PF04504	PGSC:PGSC0003DMG400014527
SEG:seg	UniParc:UPI0002952DAC	UniProt:M1B5N9	MapMan:15.5.28	:	:

Description

Transcription regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400014527]

Coordinates

chr2:+:6803883..6812430

Molecular Weight (calculated)

31462.6 Da

IEP (calculated)

10.452

GRAVY (calculated)

-0.876

Length

280 amino acids

Sequence
(BLAST)

001: MLRRGKLMPA AAAGGSSINK KMIKKNRASS EKVGAWSKED EITILKGLIK LKTEKGKNRF DYVQLYESIK QSVGHKSATA LHLQKKVKSL REKYKNNLKN
101: SRTPTIPHEE ELFYLSDKIW GKDDHHIMNQ QLTIPSSSLD MNQQFTISSP EESDTTFVGD LGLALTTMSR NQSNPLQVAL QQFKSSSTSP KSVSERCHLQ
201: ERKKKKKRKI ENQEKHRDSS IQSQLEMENR SAVANAKDIN ESATSSQMHT LPDGLTVEVM VKGKVDGKVA SPGKQPWEQG

Best Arabidopsis Sequence Match ( AT1G61730.1 )
(BLAST)

001: MTKKLNPLED PPTATSSDED DVETSEAGEA SDDSSSSEED VPIKIRIKSP SATTAAAPPA KSTAVSTAAD SDSGSETETD SDSESTNPPN SGSGKTIALN
101: TVNLKKKEDP TSSSATLALP AMKSGTKRPA SEAAATTSTK RVKKDEESVK KPGGFQRLWS EEDEILVLQG MIDFKADTGK SPYVDTNAFY DFLKKSISFE
201: VSKNQFMDKI RSLRKKYIGK EGRNEPSFVK AHDKKAFELS KFIWGPKGIA LDSNVKSNGV SKKSVAKKKI DSVKQELVFA GGSSTNGKKV EEDGGDDGCD
301: WFDNSSLVRM IASLGVDEYY VKQQWSLVSV ESKKIVEEKY KLLQAKELEF VLEKTKFLNE VASMFVEASK NKPLDT

Arabidopsis Description

Probable transcription factor At1g61730 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.