Factsheet for VIT_19s0093g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0022g01760.t01	Wine grape	nucleus	41.08	43.43
Solyc01g091340.2.1	Tomato	nucleus	42.88	43.19
PGSC0003DMT400033263	Potato	nucleus	42.88	43.12
Bra025447.1-P	Field mustard	plastid	33.87	40.52
CDY27659	Canola	plastid	33.87	40.26
AT3G12340.1	Thale cress	nucleus	35.14	39.08
TraesCS5D01G164000.1	Wheat	nucleus	30.45	39.03
TraesCS5B01G156700.1	Wheat	nucleus	30.45	39.03
KRG89916	Soybean	nucleus	41.98	38.77
TraesCS5A01G158900.1	Wheat	nucleus	30.09	38.66
CDX99700	Canola	endoplasmic reticulum, vacuole	34.05	38.03
Zm00001d019987_P001	Maize	cytosol	29.91	37.39
Os09t0293900-01	Rice	nucleus	28.47	37.26
GSMUA_Achr3P07930_001	Banana	nucleus	41.44	37.04
KXG35300	Sorghum	nucleus	29.37	36.55
VIT_00s0260g00060.t01	Wine grape	endoplasmic reticulum	9.73	36.49
HORVU5Hr1G049560.12	Barley	nucleus	28.29	33.98
CDY61640	Canola	nucleus	22.34	33.51
Zm00001d005534_P001	Maize	nucleus	22.34	33.24
VIT_01s0011g00930.t01	Wine grape	plastid	11.35	29.17
VIT_07s0031g01150.t01	Wine grape	plastid	10.81	29.13
Os09t0103800-00	Rice	cytosol	22.34	23.85
VIT_05s0094g00100.t01	Wine grape	plastid	9.37	22.51
PGSC0003DMT400037664	Potato	mitochondrion	10.63	21.07
Solyc02g005290.2.1	Tomato	nucleus	18.92	20.27

Protein Annotations

EntrezGene:100267010	wikigene:100267010	MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	ProteinID:CBI32918
ProteinID:CBI32918.3	ncoils:Coil	UniProt:D7TQZ5	EMBL:FN596009	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179	EntrezGene:LOC100267010	wikigene:LOC100267010	PFAM:PF00254
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF9	SUPFAM:SSF54534
UniParc:UPI0001985879	ArrayExpress:VIT_19s0093g00480	EnsemblPlantsGene:VIT_19s0093g00480	EnsemblPlants:VIT_19s0093g00480.t01	RefSeq:XP_002271499	RefSeq:XP_002271499.1
SEG:seg	:	:	:	:	:

Description

Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:D7TQZ5]

Coordinates

chr19:+:17459712..17467679

Molecular Weight (calculated)

60966.1 Da

IEP (calculated)

6.232

GRAVY (calculated)

-0.965

Length

555 amino acids

Sequence
(BLAST)

001: MAFWGIEVKP GKPFTHSFDG QRGRLHISQA TLGIGAASKK SLVQCNVGNK SPVLLCCLLP DKTESCTLSL EFEEVEEVIF SVIGPRSVHL TGYYLGNGRH
101: SNFNEDSESY GEDIADTETE KSNDHGEEDD YEDSFIDDGE LEVFPSSPVS SDGVLLEEKL DGKKTNNGKS SHRRLKKKYQ LSESDDDISL QQNIAKGSAG
201: VLVLESDSED KIPISSLYKS KTIEKNAKLE EEEEEEEKKA GNGIGGERGH NKLEDGKGHK DTEEKENAGT EKDGNHSIGS KRKNNAVGIG AGPERQSDLP
301: IGSVLHSTEL GPENGRKSKK KRKDRSKGVK HLEVDSVNHK NDLKEDKAPQ NENKADNMDQ NLPERKENQR PNSYKSCDTK VDQLAGDNQS DEKKIKRKRK
401: KSKTQENEGV ANMEVPPLSM NKKSGSHLEV KDRNSDANSS QVRMMSNGLV IEELITGKPD GKIACQGKKV SVYYTGKLKD SGQIFDSNIG RAPLKFRLGA
501: GKVIKGWDVG LDGMRVGDKR RLVIPPSMGY GNEGAGDNIP PNSWLVFDVE LAGAR

Best Arabidopsis Sequence Match ( AT3G12340.1 )
(BLAST)

001: MAFWGVEVKP GKTFTLKNNE ATGIRRLHLS QATLGHGTAT NRSILQCNVG NKSPLLLCVL TPDKVDSCQL NLEFEETDEV IFSVIGPRSV HLTGYFLGRS
101: TGFRPNDDES ESFGEDIVDT DMEKGSSDDY DYSDSFINDD DPAVRGSHVS STDDDEISIK EMTAKTKEKK KNGKGRRLRK KFQVSDSDSD ETSARADESS
201: NEDSVEVLNN GNEPKIAKVH SSESPLPSRV TRSKARKSTL ESGEPAKCEK TFEAKINTHK TLDNREDKPL DDAKLSPVQK DCEILSKKKR NKERSKSSAI
301: IIDSDDGEGK NMPESLQNEN PVSDKGIKSS SDVLLSQNGD ATLSKKKKKR DRREETTDVP ECPEKKKQAI DKNIEKEAGT KKPLETRTLS NGVIIEDIEK
401: GKLDGKSAVK GKKVSILYTG KLKDTGNLFD SNLGEDPLRF RLGGENVIEG LSIGVEGMRV GDKRRLIIPP ALGYSKRGLK EKVPKSAWLV YEVEAVKIR

Arabidopsis Description

FKBP43Peptidyl-prolyl cis-trans isomerase FKBP43 [Source:UniProtKB/Swiss-Prot;Acc:F4J9Q6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.