Factsheet for PGSC0003DMT400038848

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g015040.2.1	Tomato	plastid	95.32	95.32
Bra037701.1-P	Field mustard	plastid	62.13	67.59
CDY23379	Canola	plastid	62.13	67.59
CDY30419	Canola	plastid	62.13	67.59
AT2G43560.1	Thale cress	plastid	63.4	66.82
KRH24569	Soybean	plastid	62.98	63.79
VIT_05s0094g00100.t01	Wine grape	plastid	62.55	63.64
KRH29576	Soybean	plastid	62.55	63.36
Zm00001d031696_P002	Maize	plastid	60.0	60.26
GSMUA_Achr7P23820_001	Banana	plastid	57.45	57.2
TraesCS7D01G268300.1	Wheat	plastid	57.02	57.02
EES15264	Sorghum	plastid	58.3	56.61
Os08t0541400-01	Rice	plastid	58.72	52.87
TraesCS7B01G166000.2	Wheat	plastid	49.36	43.77
TraesCS7A01G266500.2	Wheat	plastid	49.79	43.66
HORVU7Hr1G056240.7	Barley	endoplasmic reticulum, extracellular, mitochondrion	49.79	36.22
PGSC0003DMT400022512	Potato	extracellular	17.02	26.85
PGSC0003DMT400067618	Potato	cytosol, plastid	23.83	24.78
PGSC0003DMT400056671	Potato	plastid	21.28	23.92
PGSC0003DMT400079626	Potato	nucleus	20.43	9.9
PGSC0003DMT400033263	Potato	nucleus	17.87	7.61
PGSC0003DMT400037664	Potato	mitochondrion	3.4	2.86

Protein Annotations

EntrezGene:102598512	MapMan:18.12.2	Gene3D:3.10.50.40	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR001179	UniProt:M1B7H0	PFAM:PF00254	EnsemblPlantsGene:PGSC0003DMG400015011	PGSC:PGSC0003DMG400015011
EnsemblPlants:PGSC0003DMT400038848	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF17
SUPFAM:SSF54534	TMHMM:TMhelix	UniParc:UPI00029650AE	RefSeq:XP_006350255.1	:	:

Description

Immunophilin [Source:PGSC_GENE;Acc:PGSC0003DMG400015011]

Coordinates

chr4:-:9207272..9212936

Molecular Weight (calculated)

25514.8 Da

IEP (calculated)

7.942

GRAVY (calculated)

-0.174

Length

235 amino acids

Sequence
(BLAST)

001: MASTSLVHPL SSAFSINLFK NHHQTIRKPQ IGNGVTRKWG LRLWAQENLM GTVEEAERYN TTKRRDLLMG LGFCGVTSFL VGSCYAEAAG LPPEEKPKLC
101: DATCEKELEN VPMVTTESGL QYKDIKVGRG PSPPVGFQVA ANYVAMVPSG QIFDSSLEKG RPYIFRVGAD QVVKGLDEGI LSMKVGGLRR LYVPGSLAFP
201: KGLTSAPGRP RVAPNSPVVF DVSLEFIPGL ESDDE

Best Arabidopsis Sequence Match ( AT2G43560.1 )
(BLAST)

001: MAASSPSLLL PLGSASRNGL TTKNPNSSRY IAARVIASET REQSCKISNL SSRREAMLLV LGVSGGLSMS SLAAYAAGLP PEDKPRLCEA ECEKELENVP
101: MVTTESGLQY KDIKVGRGPS PPVGFQVAAN YVAMVPSGQI FDSSLEKGLP YLFRVGSGQV IKGLDEGILS MKAGGKRRLY IPGPLAFPKG LVSAPGRPRV
201: APNSPVIFDV SLEFIPGLDS EEE

Arabidopsis Description

FKBP16-3Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVY6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.