Factsheet for Bra037701.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43560.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30419	Canola	plastid	100.0	100.0
CDY23379	Canola	plastid	97.69	97.69
AT2G43560.1	Thale cress	plastid	88.89	86.1
VIT_05s0094g00100.t01	Wine grape	plastid	72.69	67.97
KRH24569	Soybean	plastid	71.3	66.38
KRH29576	Soybean	plastid	70.37	65.52
Solyc04g015040.2.1	Tomato	plastid	68.52	62.98
PGSC0003DMT400038848	Potato	plastid	67.59	62.13
Zm00001d031696_P002	Maize	plastid	67.13	61.97
GSMUA_Achr7P23820_001	Banana	plastid	65.28	59.75
EES15264	Sorghum	plastid	66.2	59.09
TraesCS7D01G268300.1	Wheat	plastid	63.89	58.72
Os08t0541400-01	Rice	plastid	64.81	53.64
TraesCS7A01G266500.2	Wheat	plastid	54.63	44.03
TraesCS7B01G166000.2	Wheat	plastid	52.78	43.02
HORVU7Hr1G056240.7	Barley	endoplasmic reticulum, extracellular, mitochondrion	52.78	35.29
Bra017596.1-P	Field mustard	plastid	25.93	27.05
Bra013225.1-P	Field mustard	endoplasmic reticulum	18.98	26.62
Bra037476.1-P	Field mustard	endoplasmic reticulum	19.44	25.77
Bra020690.1-P	Field mustard	endoplasmic reticulum	19.44	25.15
Bra011839.1-P	Field mustard	plastid	18.98	20.5
Bra019172.1-P	Field mustard	nucleus	22.22	10.46
Bra013887.1-P	Field mustard	nucleus	21.76	10.2
Bra025447.1-P	Field mustard	plastid	21.3	9.91

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	EnsemblPlantsGene:Bra037701	EnsemblPlants:Bra037701.1	EnsemblPlants:Bra037701.1-P	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534
GO:GO:0009536	GO:GO:0009543	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	GO:GO:0031977	InterPro:IPR001179	UniProt:M4F9D8	PFAM:PF00254	InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF17	SUPFAM:SSF54534	UniParc:UPI0002543CA9
SEG:seg	:	:	:	:	:

Description

AT2G43560 (E=1e-080) | immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein

Coordinates

chrA04:-:18135497..18137233

Molecular Weight (calculated)

22872.8 Da

IEP (calculated)

8.586

GRAVY (calculated)

-0.125

Length

216 amino acids

Sequence
(BLAST)

001: MAASSSPSLL LPLGSASRNG PTMKTPRCIS TRAITASETR NKSCSRRDAM LLVLGVSGLS MSYLPAAYAA GLPPEDKPRL CEAECEKELE NVPMVTTESG
101: LQYKDIKVGK GPSPPVGYQV AANYVAMVPS GQIFDSSLEK GLPYLFRVGS GQVIKGLDEG LLTMKAGGKR RLYIPGPLAF PKGLVSAPGR PRVAPNSPVV
201: FDVSLEYIPG LESDEE

Best Arabidopsis Sequence Match ( AT2G43560.1 )
(BLAST)

001: MAASSPSLLL PLGSASRNGL TTKNPNSSRY IAARVIASET REQSCKISNL SSRREAMLLV LGVSGGLSMS SLAAYAAGLP PEDKPRLCEA ECEKELENVP
101: MVTTESGLQY KDIKVGRGPS PPVGFQVAAN YVAMVPSGQI FDSSLEKGLP YLFRVGSGQV IKGLDEGILS MKAGGKRRLY IPGPLAFPKG LVSAPGRPRV
201: APNSPVIFDV SLEFIPGLDS EEE

Arabidopsis Description

FKBP16-3Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVY6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.