Factsheet for Bra019172.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010432.1-P
Bra026415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25340.1	Bra010432.1-P	AT4G26630.1	25387881
AT4G25340.1	Bra026415.1-P	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49705	Canola	nucleus	99.56	99.56
Bra013887.1-P	Field mustard	nucleus	72.33	72.02
AT4G25340.1	Thale cress	nucleus	70.81	68.13
GSMUA_Achr3P07930_001	Banana	nucleus	44.23	32.69
Bra013225.1-P	Field mustard	endoplasmic reticulum	10.89	32.47
Bra025447.1-P	Field mustard	plastid	32.46	32.11
Bra037476.1-P	Field mustard	endoplasmic reticulum	11.33	31.9
Bra017596.1-P	Field mustard	plastid	13.07	28.99
Bra020690.1-P	Field mustard	endoplasmic reticulum	10.24	28.14
Bra011839.1-P	Field mustard	plastid	10.02	23.0
Bra037701.1-P	Field mustard	plastid	10.46	22.22

Protein Annotations

MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	EnsemblPlantsGene:Bra019172	EnsemblPlants:Bra019172.1	EnsemblPlants:Bra019172.1-P
ncoils:Coil	InterPro:FK506_BP	GO:GO:0000412	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016853	GO:GO:0018208	GO:GO:0019538	InterPro:IPR001179	UniProt:M4DRM9	PFAM:PF00254
PIRSF:PIRSF001473	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF9
SUPFAM:SSF54534	UniParc:UPI00025410CD	SEG:seg	:	:	:

Description

AT4G25340 (E=5e-080) | immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related

Coordinates

chrA03:-:25872612..25875023

Molecular Weight (calculated)

50444.3 Da

IEP (calculated)

4.627

GRAVY (calculated)

-1.037

Length

459 amino acids

Sequence
(BLAST)

001: MVFWGIEVKP GKPQAYNPEN EQGTLHLTQA TLGAGLGKEK SVIQCSIGGN APVYLCSLLP NKSECCPLNL EFDDNDEAVE FSVTGDRSIH LSGFLQAYDE
101: EEEECGVDDY EDDSDGIDIG DTESGESEFD SEEDEDHMDE FEDFIDHNLD MYRQSSVPNS GVVIEEIEDE EKPATDDKTK RSKKKSKASK DESANKQIVV
201: KESAHAPVLE SEDEDGLPIL KEKTPETEKK SAAKMDVDDV EQGSNKKRKA KAPEQESVNK NKKKKNQKEK KNEESASKGE ADEKAETEDV LKKEETSQSS
301: SNPKAQNGAA NNAMSENSKT PVESAEKKKK KKKKSNEEAK EESKAISSRT YPNGLVVEEI RMGKPNGKKA TPGKQVSVCY TGKLQKNGEV FDSNKNGFKF
401: RLGVGQVIKG WDVGVNGMRI GDKRKLTIPP SMGYGAKGAG GDIPPNAWLT FDVELLDVK

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.