CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25340.1	CDX89318	AT4G26630.1	25387881
AT4G25340.1	CDX94304	AT4G26630.1	25387881
AT4G25340.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019172.1-P	Field mustard	nucleus	99.56	99.56
CDX92695	Canola	nucleus	91.29	93.95
CDX89421	Canola	nucleus	73.2	72.73
CDX94456	Canola	nucleus	58.82	70.87
AT4G25340.1	Thale cress	nucleus	71.02	68.34
GSMUA_Achr3P07930_001	Banana	nucleus	44.01	32.53
CDY67189	Canola	endoplasmic reticulum	10.89	32.47
CDY52280	Canola	endoplasmic reticulum	10.89	32.47
CDY27659	Canola	plastid	32.9	32.33
CDY15105	Canola	endoplasmic reticulum	10.89	32.26
CDX86294	Canola	endoplasmic reticulum	11.33	31.9
CDX85349	Canola	endoplasmic reticulum	11.11	31.88
CDX99700	Canola	endoplasmic reticulum, vacuole	33.12	30.58
CDY05669	Canola	endoplasmic reticulum, extracellular, golgi	10.68	30.06
CDY51059	Canola	endoplasmic reticulum	10.68	29.52
CDY13042	Canola	plastid	13.07	28.99
CDY62066	Canola	endoplasmic reticulum	11.55	28.96
CDY61640	Canola	nucleus	22.0	27.3
CDY11786	Canola	cytosol	14.6	25.97
CDY42000	Canola	plastid	10.02	23.0
CDY42648	Canola	plastid	10.02	23.0
CDY23379	Canola	plastid	10.68	22.69
CDY30419	Canola	plastid	10.46	22.22

Protein Annotations

MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	GO:A0A078IFL9	UniProt:A0A078IFL9	EnsemblPlants:CDY49705
ProteinID:CDY49705	ProteinID:CDY49705.1	ncoils:Coil	InterPro:FK506_BP	GO:GO:0000412	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016853	GO:GO:0018208	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00093603001
InterPro:IPR001179	PFAM:PF00254	PIRSF:PIRSF001473	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059
PANTHER:PTHR43811	PANTHER:PTHR43811:SF9	SUPFAM:SSF54534	UniParc:UPI0004EF3FA8	SEG:seg	:

Description

BnaA03g47310DFK506-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFL9]

Coordinates

chrLK032854:-:10901..13594

Molecular Weight (calculated)

50490.3 Da

IEP (calculated)

4.605

GRAVY (calculated)

-1.063

Length

459 amino acids

Sequence
(BLAST)

001: MVFWGIEVKP GKPQAYNPEN EQGTLHLTQA TLGAGLGKEK SVIQCSIGGN APVYLCSLLP NKSECCPLNL EFDDNDEAVE FSVTGDRSIH LSGFLQAYDE
101: EEEECGEDDY EDDSDGIDIG DTESGESEYD SEEDEDHMDE FEDFIDHNLD MYRQSSVPNS GVVIEEIEDE EKPATDDKTK RSKKKSKASK DESANKQIVV
201: KESAHAPVLE SEDEDGLPIL KEKTPETEKK SAAKMDVDDV EQGSNKKRKA KAPEQESVNK NKKKKNQKEK KNEESASKGE ADEKAETEDV LKKEETSQSS
301: SNPKAQNGAA NNAMSENSKT PVESAEKKKK KKKKSNEEAK EESKAISSRT YPNGLVVEEI RMGKPNGKKA TPGKQVSVCY TGKLQKNGEV FDSNKNGFKF
401: RLGVGQVIKG WDVGVNGMRI GDKRKLTIPP SMGYGAKGAG GDIPPNAWLT FDVELLDVK

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.