CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25340.1	CDX89318	AT4G26630.1	25387881
AT4G25340.1	CDX94304	AT4G26630.1	25387881
AT4G25340.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013887.1-P	Field mustard	nucleus	95.24	95.44
CDX94456	Canola	nucleus	77.71	94.23
CDX92695	Canola	nucleus	72.51	75.11
CDY49705	Canola	nucleus	72.73	73.2
AT4G25340.1	Thale cress	nucleus	70.35	68.13
GSMUA_Achr3P07930_001	Banana	nucleus	43.72	32.53
CDY67189	Canola	endoplasmic reticulum	10.61	31.82
CDY52280	Canola	endoplasmic reticulum	10.61	31.82
CDY15105	Canola	endoplasmic reticulum	10.61	31.61
CDX85349	Canola	endoplasmic reticulum	10.82	31.25
CDY62066	Canola	endoplasmic reticulum	12.12	30.6
CDY27659	Canola	plastid	30.52	30.19
CDX86294	Canola	endoplasmic reticulum	10.61	30.06
CDY13042	Canola	plastid	13.42	29.95
CDY05669	Canola	endoplasmic reticulum, extracellular, golgi	10.39	29.45
CDY51059	Canola	endoplasmic reticulum	10.39	28.92
CDX99700	Canola	endoplasmic reticulum, vacuole	30.74	28.57
CDY11786	Canola	cytosol	14.72	26.36
CDY61640	Canola	nucleus	19.05	23.78
CDY23379	Canola	plastid	10.39	22.22
CDY30419	Canola	plastid	10.17	21.76
CDY42648	Canola	plastid	9.09	21.0
CDY42000	Canola	plastid	9.09	21.0

Protein Annotations

MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	GO:A0A078DJN9	EnsemblPlants:CDX89421	ProteinID:CDX89421
ProteinID:CDX89421.1	ncoils:Coil	InterPro:FK506_BP	GO:GO:0000412	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0018208	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00149668001	InterPro:IPR001179	PFAM:PF00254
PIRSF:PIRSF001473	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF9
SUPFAM:SSF54534	UniParc:UPI0004EE5CE9	SEG:seg	:	:	:

Description

BnaA01g14720D

Coordinates

chrLK031858:+:1531384..1534332

Molecular Weight (calculated)

51151.1 Da

IEP (calculated)

4.701

GRAVY (calculated)

-1.136

Length

462 amino acids

Sequence
(BLAST)

001: MGFWGLEVKP GKPQAFHPKN EQGKLHLTQA TLGSGSGKEK SVIQCSIAGN TPIYLCSLLP NKTECCPLNL EFEDDDETVE FSVTGDRSIH LSGFLEEYDD
101: GEEYEQDEDD SDGMDIAEMG SQESSDYDSE EDEDEDEDEM DEDQMDKFED FLDRNLEMYR QSSVPNSGVV IEEIEDEEKP AEDTKTKRSK KKSQAAKDES
201: ANKQIVVKES AHASDLESED EDGFPIPKAI KSGEKMSSDV DQQGSNKKRK AKASEPDGVQ ESENKNKKKK NQKEKKKGES ASNEKVETVS VLKKKETTQT
301: SSNQKAQNET KNNAMSQSSK TPDKSAEKKN KQKNTSEKAT VENSKASQEQ TYPNGLVVEE LKLGKPNGKQ ATPGKQVSVR YIGKLQKNGK IFDSNIGKAP
401: FKFKIGRGEV IKGWDVGVNG MRVGEKRKLT IPPSMGYGSR GAGGQIPPNA WLSFEVELID VK

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.