CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25340.1	CDX89318	AT4G26630.1	25387881
AT4G25340.1	CDX94304	AT4G26630.1	25387881
AT4G25340.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49705	Canola	nucleus	93.95	91.29
CDX89421	Canola	nucleus	75.11	72.51
CDX94456	Canola	nucleus	60.31	70.6
AT4G25340.1	Thale cress	nucleus	72.2	67.51
CDX86294	Canola	endoplasmic reticulum	11.88	32.52
CDX85349	Canola	endoplasmic reticulum	11.66	32.5
CDY67189	Canola	endoplasmic reticulum	11.21	32.47
CDY52280	Canola	endoplasmic reticulum	11.21	32.47
CDY15105	Canola	endoplasmic reticulum	11.21	32.26
GSMUA_Achr3P07930_001	Banana	nucleus	44.84	32.21
CDY27659	Canola	plastid	33.41	31.91
CDY05669	Canola	endoplasmic reticulum, extracellular, golgi	11.21	30.67
CDX99700	Canola	endoplasmic reticulum, vacuole	33.63	30.18
CDY51059	Canola	endoplasmic reticulum	11.21	30.12
CDY62066	Canola	endoplasmic reticulum	12.11	29.51
CDY13042	Canola	plastid	13.68	29.47
CDY61640	Canola	nucleus	22.2	26.76
CDY11786	Canola	cytosol	15.02	25.97
CDY23379	Canola	plastid	10.99	22.69
CDY30419	Canola	plastid	10.76	22.22
CDY42000	Canola	plastid	9.87	22.0
CDY42648	Canola	plastid	9.87	22.0

Protein Annotations

MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	GO:A0A078DTM3	EnsemblPlants:CDX92695	ProteinID:CDX92695
ProteinID:CDX92695.1	ncoils:Coil	InterPro:FK506_BP	GO:GO:0000412	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0018208	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00154508001	InterPro:IPR001179	PFAM:PF00254
PIRSF:PIRSF001473	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF9
SUPFAM:SSF54534	UniParc:UPI0004EED488	SEG:seg	:	:	:

Description

BnaC07g39530D

Coordinates

chrLK031873:-:351064..353748

Molecular Weight (calculated)

49019.7 Da

IEP (calculated)

4.649

GRAVY (calculated)

-1.056

Length

446 amino acids

Sequence
(BLAST)

001: MVFWGIEVKP GKPQAYNPEN EQGKLHLTQA TLGAGLGKEK SVIQCSIGGN APVYLCSLLP NKSECCPLNL EFDYNDEAVE FSVTGGRSIH LSGFLQAYDE
101: EECEQDDDED DSDGIDIGDT ESGESEYDSE EDEDQMDEFE DFIDHNLDMY RQSSVPNSGV VIEEIEDEEK PAKDDKTKRS KKKSQASKDE SANKQIVVKE
201: SAHAPVLESE DEDGLPIAKE KTPEPEKKSA AKMDVDDDEQ GSNKKRKAKA PEQESVNKNK KKKNQKEKKN EEADEKVETG KVETSQSSSN PKAQNGAVNN
301: AMSESSKTPV QSSEKKNKKK KKSNEGAKEE SKAISSRTYP NGLVVEEMKM GKPNGKKATP GKQVMVSYTG KLKNGEVFDS NKNGFEFRLG VGQVIKGWDV
401: GVNGMRIGDK RKLTIPPSMG YGARGAGGDI PPNAWLTFDV ELLDVK

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.