CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90891
CDY17951
CDY21952
CDY22118

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	CDX90891	AT4G03280.1	12424338
AT4G39710.1	CDY17951	AT4G03280.1	12424338
AT4G39710.1	CDY21952	AT4G03280.1	12424338
AT4G39710.1	CDY22118	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011839.1-P	Field mustard	plastid	100.0	100.0
CDY42648	Canola	plastid	96.5	96.5
AT4G39710.1	Thale cress	plastid	85.0	78.34
VIT_07s0031g01150.t01	Wine grape	plastid	60.5	58.74
KRH43236	Soybean	nucleus	57.5	55.02
KRH59400	Soybean	extracellular, vacuole	43.0	54.43
Solyc04g054520.2.1	Tomato	nucleus	54.5	52.15
PGSC0003DMT400056671	Potato	plastid	54.0	51.67
KXG30740	Sorghum	plastid	56.5	50.0
GSMUA_Achr5P24380_001	Banana	plastid	56.5	48.29
Zm00001d018077_P002	Maize	plastid	54.0	47.79
TraesCS6D01G282000.1	Wheat	plastid	53.0	47.75
TraesCS6B01G331700.1	Wheat	plastid	52.5	47.51
TraesCS6A01G302500.1	Wheat	plastid	52.5	47.3
Os02t0751600-01	Rice	plastid	54.0	46.96
HORVU6Hr1G075080.2	Barley	plastid	52.5	44.49
CDY62066	Canola	endoplasmic reticulum	28.0	30.6
CDY13042	Canola	plastid	30.0	28.99
CDY67189	Canola	endoplasmic reticulum	19.0	24.68
CDY52280	Canola	endoplasmic reticulum	18.5	24.03
CDY15105	Canola	endoplasmic reticulum	18.5	23.87
CDX85349	Canola	endoplasmic reticulum	18.5	23.12
CDX86294	Canola	endoplasmic reticulum	18.5	22.7
CDY51059	Canola	endoplasmic reticulum	18.5	22.29
CDY05669	Canola	endoplasmic reticulum, extracellular, golgi	18.0	22.09
CDY30419	Canola	plastid	20.5	18.98
CDY23379	Canola	plastid	20.0	18.52
CDY11786	Canola	cytosol	16.0	12.4
CDY49705	Canola	nucleus	23.0	10.02
CDX92695	Canola	nucleus	22.0	9.87
CDY27659	Canola	plastid	21.5	9.21
CDX94456	Canola	nucleus	17.5	9.19
CDX89421	Canola	nucleus	21.0	9.09
CDX99700	Canola	endoplasmic reticulum, vacuole	22.5	9.05
CDY61640	Canola	nucleus	13.5	7.3

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	GO:A0A078HTZ3	UniProt:A0A078HTZ3	EnsemblPlants:CDY42000	ProteinID:CDY42000
ProteinID:CDY42000.1	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00074005001
InterPro:IPR001179	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516
PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	UniParc:UPI0002546060	SEG:seg	:	:

Description

BnaA01g05720DPeptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078HTZ3]

Coordinates

chrLK032511:-:238228..239898

Molecular Weight (calculated)

21248.2 Da

IEP (calculated)

8.646

GRAVY (calculated)

-0.077

Length

200 amino acids

Sequence
(BLAST)

001: MAISTLTLTS SHYTSSFRPT ICSSSSSSSS SFSCLCSSSS STDGQQKQRS LTGAKKNVFG VGLGLLAATI LSITPLDADA TRIEYYATVG DPLCEYSYAK
101: SGLGFCDIAV GFGDKAPRGV LVNVHYTARF ADGTLFDSTY KRARPLTMRI GGKRKLQIPP KLAYGPEPAG CFSGDCNIPG NATLLYDINF VEIYPGSNTR

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.