CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 4
golgi 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22477
KRH26877

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	KRH22477	AT4G03280.1	12424338
AT4G39710.1	KRH26877	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43236	Soybean	nucleus	85.44	64.59
Solyc04g054520.2.1	Tomato	nucleus	65.19	49.28
PGSC0003DMT400056671	Potato	plastid	65.19	49.28
VIT_07s0031g01150.t01	Wine grape	plastid	63.29	48.54
AT4G39710.1	Thale cress	plastid	65.19	47.47
Bra011839.1-P	Field mustard	plastid	54.43	43.0
CDY42000	Canola	plastid	54.43	43.0
CDY42648	Canola	plastid	54.43	43.0
GSMUA_Achr5P24380_001	Banana	plastid	56.96	38.46
Os02t0751600-01	Rice	plastid	53.8	36.96
Zm00001d018077_P002	Maize	plastid	51.27	35.84
KXG30740	Sorghum	plastid	50.63	35.4
TraesCS6B01G331700.1	Wheat	plastid	49.37	35.29
TraesCS6A01G302500.1	Wheat	plastid	48.73	34.68
TraesCS6D01G282000.1	Wheat	plastid	48.73	34.68
HORVU6Hr1G075080.2	Barley	plastid	49.37	33.05
KRH66149	Soybean	endoplasmic reticulum	27.85	29.93
KRH07427	Soybean	endoplasmic reticulum	27.22	27.92
KRH42434	Soybean	plastid	34.18	25.0
KRH24569	Soybean	plastid	22.15	15.09
KRH29576	Soybean	plastid	21.52	14.66
KRH77741	Soybean	nucleus	20.89	6.56
KRH27794	Soybean	nucleus	20.89	6.56
KRG89916	Soybean	nucleus	21.52	5.66

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	EMBL:ACUP02003321	EnsemblPlantsGene:GLYMA_05G181400	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	GO:GO:0019538	GO:GO:0061077	UniProt:I1K4M3
InterPro:IPR001179	EnsemblPlants:KRH59400	ProteinID:KRH59400	ProteinID:KRH59400.1	PFAM:PF00254	InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	TMHMM:TMhelix
UniParc:UPI0002954327	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:36938174..36939447

Molecular Weight (calculated)

17013.6 Da

IEP (calculated)

5.097

GRAVY (calculated)

0.248

Length

158 amino acids

Sequence
(BLAST)

001: MALSLSSILL FLSHNDNKNP LVGIGIGVVT ACVMGLTALD ADATRIEYYA TVGEPFCEYN YVHYTARFAD GIVFDSSYKR LDLSPCALVI KGLDQGILGG
101: EGVPPMRISG KCKLQIPLHL AYGPEPAVCF SGDCNIPGNA TLLYDINFIE VYSGNRSK

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.