CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27794	Soybean	nucleus	92.25	92.25
AT5G05420.1	Thale cress	cytosol	16.1	56.64
VIT_16s0022g01760.t01	Wine grape	nucleus	52.09	49.9
Solyc03g007170.2.1	Tomato	nucleus	44.53	46.67
PGSC0003DMT400079626	Potato	nucleus	44.14	45.77
Zm00001d003535_P001	Maize	nucleus	11.73	42.14
TraesCS2A01G314800.2	Wheat	nucleus	37.97	40.47
TraesCS2D01G313000.1	Wheat	nucleus	38.37	39.63
TraesCS2B01G333300.1	Wheat	nucleus	38.37	39.63
Zm00001d025522_P001	Maize	plasma membrane	38.97	39.6
EES10880	Sorghum	nucleus	38.97	39.2
Os04t0446500-02	Rice	nucleus	40.16	38.48
HORVU2Hr1G078350.3	Barley	nucleus	37.18	37.93
GSMUA_Achr3P07930_001	Banana	nucleus	44.73	36.23
KRH66149	Soybean	endoplasmic reticulum	10.14	34.69
KRH07427	Soybean	endoplasmic reticulum	9.94	32.47
KRG89916	Soybean	nucleus	35.79	29.95
KRH42434	Soybean	plastid	12.33	28.7
KRH43236	Soybean	nucleus	10.34	24.88
KRH29576	Soybean	plastid	10.54	22.84
KRH24569	Soybean	plastid	10.34	22.41
KRH59400	Soybean	extracellular, vacuole	6.56	20.89

Protein Annotations

EntrezGene:100789099	MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	EMBL:ACUP02000684	EnsemblPlantsGene:GLYMA_01G231400
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	UniProt:I1JAK5	InterPro:IPR001179
EnsemblPlants:KRH77741	ProteinID:KRH77741	ProteinID:KRH77741.1	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF9	SUPFAM:SSF54534	UniParc:UPI00023378EE	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:55836158..55840386

Molecular Weight (calculated)

55265.6 Da

IEP (calculated)

5.927

GRAVY (calculated)

-0.909

Length

503 amino acids

Sequence
(BLAST)

001: MGFWGIEVKP GKPCPYHADN VRGKLHVTQA TLGIGSSSEK SILQCSSGHK SPVFLCSLLP DKVESCPLNL EFDADDLVAF SVVGSRSIHL SGYFADDDGD
101: DLRDDYEYDS WGEDIEGTES EESSEYDSED GYADDFIVDS DTDMYPSSPI PNSGVVIEEI MDDDKPKNGD DPTKKLKKKK HVAQLKEKDN KSSELPIVAK
201: GDTDLVVESE DEDGFPISIA EKGVSVSKTE AEMKGEQARK KTEKANKKEK DVGHSASVKR KVDSADEDEP QDGKKKKKRN KLKDHIKGGS DHASDNSNEK
301: KVTEPDEKHA EDVKTSTKLS DVSHAKDEDG GKLSNNEVLV EKKIKKKNKK KTKESEGEAA ANQITTTAEK QNLSTEKKGK KQTETKPSQV RTFPNGLIIE
401: EVFMGKPDGK KAAPGKKVSV KYIGKLQKDG KIFDSNVGRA PFKFRLGVGQ VIKGWEVGIN GMRIGDKRRI TIPPSMGYAD KRVGSIPPSS WLVFDVELVD
501: VGR

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.