Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G39710.1 | CDX90891 | AT4G03280.1 | 12424338 |
| AT4G39710.1 | CDY17951 | AT4G03280.1 | 12424338 |
| AT4G39710.1 | CDY21952 | AT4G03280.1 | 12424338 |
| AT4G39710.1 | CDY22118 | AT4G03280.1 | 12424338 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011839.1-P | Field mustard | plastid | 96.5 | 96.5 |
| CDY42000 | Canola | plastid | 96.5 | 96.5 |
| AT4G39710.1 | Thale cress | plastid | 85.0 | 78.34 |
| VIT_07s0031g01150.t01 | Wine grape | plastid | 60.0 | 58.25 |
| KRH43236 | Soybean | nucleus | 57.5 | 55.02 |
| KRH59400 | Soybean | extracellular, vacuole | 43.0 | 54.43 |
| Solyc04g054520.2.1 | Tomato | nucleus | 55.0 | 52.63 |
| PGSC0003DMT400056671 | Potato | plastid | 54.5 | 52.15 |
| KXG30740 | Sorghum | plastid | 56.5 | 50.0 |
| Zm00001d018077_P002 | Maize | plastid | 54.5 | 48.23 |
| TraesCS6D01G282000.1 | Wheat | plastid | 53.5 | 48.2 |
| TraesCS6B01G331700.1 | Wheat | plastid | 53.0 | 47.96 |
| GSMUA_Achr5P24380_001 | Banana | plastid | 56.0 | 47.86 |
| TraesCS6A01G302500.1 | Wheat | plastid | 53.0 | 47.75 |
| Os02t0751600-01 | Rice | plastid | 53.5 | 46.52 |
| HORVU6Hr1G075080.2 | Barley | plastid | 53.0 | 44.92 |
| CDY62066 | Canola | endoplasmic reticulum | 28.0 | 30.6 |
| CDY13042 | Canola | plastid | 30.0 | 28.99 |
| CDY67189 | Canola | endoplasmic reticulum | 18.5 | 24.03 |
| CDY52280 | Canola | endoplasmic reticulum | 18.0 | 23.38 |
| CDY15105 | Canola | endoplasmic reticulum | 18.0 | 23.23 |
| CDX85349 | Canola | endoplasmic reticulum | 18.0 | 22.5 |
| CDX86294 | Canola | endoplasmic reticulum | 18.0 | 22.09 |
| CDY51059 | Canola | endoplasmic reticulum | 18.0 | 21.69 |
| CDY05669 | Canola | endoplasmic reticulum, extracellular, golgi | 17.5 | 21.47 |
| CDY30419 | Canola | plastid | 20.5 | 18.98 |
| CDY23379 | Canola | plastid | 20.0 | 18.52 |
| CDY11786 | Canola | cytosol | 15.5 | 12.02 |
| CDY49705 | Canola | nucleus | 23.0 | 10.02 |
| CDX92695 | Canola | nucleus | 22.0 | 9.87 |
| CDY27659 | Canola | plastid | 21.5 | 9.21 |
| CDX94456 | Canola | nucleus | 17.5 | 9.19 |
| CDX89421 | Canola | nucleus | 21.0 | 9.09 |
| CDX99700 | Canola | endoplasmic reticulum, vacuole | 22.5 | 9.05 |
| CDY61640 | Canola | nucleus | 13.5 | 7.3 |
Protein Annotations
| MapMan:18.12.2 | Gene3D:3.10.50.40 | GO:A0A078I0P2 | UniProt:A0A078I0P2 | EnsemblPlants:CDY42648 | ProteinID:CDY42648 |
| ProteinID:CDY42648.1 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00075157001 |
| InterPro:IPR001179 | PFAM:PF00254 | InterPro:PPIase_FKBP | InterPro:PPIase_FKBP_dom | PFscan:PS50059 | PANTHER:PTHR10516 |
| PANTHER:PTHR10516:SF269 | SUPFAM:SSF54534 | UniParc:UPI0004EF0D83 | SEG:seg | : | : |
Description
BnaC01g00600DPeptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078I0P2]
Coordinates
chrLK032530:-:217677..221169
Molecular Weight (calculated)
21453.5 Da
IEP (calculated)
8.831
GRAVY (calculated)
-0.080
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISTLTLTS SHYTRSFRPT ISSSSSSSSS FLCLCSSSSS STDCQQKQRS FTAAKKNVFG MGLGLLAATI LSITPLDADA TRIEYYATVG DPLCEYSYAK
101: SGLGFCDIAV GFGDKAPRGV LVNVHYTARF ADGTLFDSTY KRARPLTMRI GGKRKLQIPP KLAYGPEPAG CFSGDCNIPG NATLLYDINF VEIYPGSNTR
101: SGLGFCDIAV GFGDKAPRGV LVNVHYTARF ADGTLFDSTY KRARPLTMRI GGKRKLQIPP KLAYGPEPAG CFSGDCNIPG NATLLYDINF VEIYPGSNTR
001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR
Arabidopsis Description
PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.