CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046940_P001	Maize	plastid	65.85	87.79
TraesCS7B01G388800.1	Wheat	plastid	54.93	76.85
Os06t0663800-01	Rice	extracellular	58.45	76.15
TraesCS7D01G472600.1	Wheat	plastid	54.23	75.86
TraesCS7A01G485300.1	Wheat	plastid	54.23	75.86
HORVU7Hr1G109380.4	Barley	plastid	54.93	72.22
GSMUA_Achr8P06890_001	Banana	plastid	46.13	58.48
CDY62066	Canola	endoplasmic reticulum	34.51	53.55
AT5G45680.1	Thale cress	plastid	36.97	50.48
VIT_01s0011g00930.t01	Wine grape	plastid	38.38	50.46
Bra017596.1-P	Field mustard	plastid	36.62	50.24
CDY13042	Canola	plastid	36.62	50.24
KRH42434	Soybean	plastid	38.03	50.0
PGSC0003DMT400067618	Potato	cytosol, plastid	35.92	45.13
Solyc08g006540.2.1	Tomato	plastid	36.97	39.92
KXG30740	Sorghum	plastid	30.99	38.94
EER99137	Sorghum	endoplasmic reticulum	18.66	35.57
EES04100	Sorghum	endoplasmic reticulum	18.31	33.55
EES15264	Sorghum	plastid	22.54	26.45
EES10880	Sorghum	nucleus	18.31	10.4
KXG35300	Sorghum	nucleus	14.79	9.42

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	UniProt:A0A1W0VUA2	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR001179	EnsemblPlants:OQU76834	ProteinID:OQU76834	ProteinID:OQU76834.1	PFAM:PF00254
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	EnsemblPlantsGene:SORBI_3010G219500
SUPFAM:SSF54534	SignalP:SignalP-noTM	UniParc:UPI0009DC8C3E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:56174464..56175971

Molecular Weight (calculated)

29447.4 Da

IEP (calculated)

10.580

GRAVY (calculated)

-0.085

Length

284 amino acids

Sequence
(BLAST)

001: MGFSYTAVRL SHLGLGVSLF ATAQKVAVTN SRARPDHHQA PRFRSGDPPR LIRWTNGNGK PALPPPRQQA VAMAPAASST SASPLSRLLL LLSLPKPGAA
101: RHPTSSSSSP ARPCPDAGLV LRRREAAAAV LSTALLSRFV LPAAASAAAD GGGECPLEVA PSGLAFCDRV VGTGAAAQEG QLIRAHYTGR LEDGTVFDSS
201: YKRGRPLTFR VGVGEVIKGW DQGIVGGEGI PPMLAGGKRT LKLPPALAYG EKGAGCRGWE PTSCVIPPNS TLLFDVEYVG RASG

Best Arabidopsis Sequence Match ( AT5G45680.1 )
(BLAST)

001: MSSLGFSVGT CSPPSEKRKC RFLVNNSLNK AEAINLRNKQ KVSSDPELSF AQLSSCGRRE AIIGFGFSIG LLDNVSALAE TTSCEFSVSP SGLAFCDKVV
101: GYGPEAVKGQ LIKAHYVGKL ENGKVFDSSY NRGKPLTFRI GVGEVIKGWD QGILGSDGIP PMLTGGKRTL RIPPELAYGD RGAGCKGGSC LIPPASVLLF
201: DIEYIGKA

Arabidopsis Description

FKBP13Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.