Factsheet for Zm00001d046940_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0663800-01	Rice	extracellular	77.46	75.69
TraesCS7B01G388800.1	Wheat	plastid	69.48	72.91
TraesCS7D01G472600.1	Wheat	plastid	68.54	71.92
TraesCS7A01G485300.1	Wheat	plastid	68.54	71.92
HORVU7Hr1G109380.4	Barley	plastid	67.61	66.67
OQU76834	Sorghum	mitochondrion, plastid	87.79	65.85
GSMUA_Achr8P06890_001	Banana	plastid	59.15	56.25
CDY62066	Canola	endoplasmic reticulum	47.42	55.19
KRH42434	Soybean	plastid	53.52	52.78
AT5G45680.1	Thale cress	plastid	49.77	50.96
VIT_01s0011g00930.t01	Wine grape	plastid	51.64	50.93
Bra017596.1-P	Field mustard	plastid	49.3	50.72
CDY13042	Canola	plastid	49.3	50.72
PGSC0003DMT400067618	Potato	cytosol, plastid	48.83	46.02
Zm00001d018077_P002	Maize	plastid	41.78	39.38
Solyc08g006540.2.1	Tomato	plastid	48.36	39.16
Zm00001d042372_P002	Maize	endoplasmic reticulum, extracellular, golgi	24.41	33.55
Zm00001d021021_P001	Maize	endoplasmic reticulum	23.94	31.29
Zm00001d012064_P001	Maize	endoplasmic reticulum, extracellular, golgi	24.41	27.96
Zm00001d031696_P002	Maize	plastid	27.23	24.79
Zm00001d003535_P001	Maize	nucleus	11.74	17.86
Zm00001d025522_P001	Maize	plasma membrane	24.41	10.51
Zm00001d019987_P001	Maize	cytosol	19.72	9.46
Zm00001d005534_P001	Maize	nucleus	14.55	8.31

Protein Annotations

EntrezGene:100281841	MapMan:18.12.2	Gene3D:3.10.50.40	ProteinID:AQL05224.1	UniProt:B6SZG7	EMBL:EU958132
EMBL:EU958134	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
GO:GO:0031977	InterPro:IPR001179	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059
PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	UniParc:UPI000182C92C	EnsemblPlantsGene:Zm00001d046940	EnsemblPlants:Zm00001d046940_P001
EnsemblPlants:Zm00001d046940_T001	SEG:seg	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase

Coordinates

chr9:-:111957797..111959038

Molecular Weight (calculated)

21879.2 Da

IEP (calculated)

9.837

GRAVY (calculated)

-0.101

Length

213 amino acids

Sequence
(BLAST)

001: MGPGASTSAQ PLSRLLLSLP KPGAAKHPRS SSSSSSPSQP RPDVAAARSP GLVLRRREAA AALLSTAFLS RFALPAAAAD GGECPLEVAP SGLAFCDRVV
101: GTGAAAQEGQ LIRAHYTGRL EDGTVFDSSY KRGKPLTFRV GVGEVIKGWD QGIVGGEGIP PMLAGGKRTL KLPPALAYGE KGAGCRGWEP TSCVIPPNST
201: LLFDVEYVGR ATG

Best Arabidopsis Sequence Match ( AT5G45680.1 )
(BLAST)

001: MSSLGFSVGT CSPPSEKRKC RFLVNNSLNK AEAINLRNKQ KVSSDPELSF AQLSSCGRRE AIIGFGFSIG LLDNVSALAE TTSCEFSVSP SGLAFCDKVV
101: GYGPEAVKGQ LIKAHYVGKL ENGKVFDSSY NRGKPLTFRI GVGEVIKGWD QGILGSDGIP PMLTGGKRTL RIPPELAYGD RGAGCKGGSC LIPPASVLLF
201: DIEYIGKA

Arabidopsis Description

FKBP13Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.