Factsheet for Solyc12g005630.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g054520.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	Solyc04g054520.2.1	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035747	Potato	plastid	96.97	97.39
KRH26877	Soybean	plastid	77.49	78.85
KRH22477	Soybean	nucleus, plastid	77.06	78.41
GSMUA_Achr9P24590_001	Banana	plastid	75.76	76.75
AT4G03280.1	Thale cress	plastid	75.76	76.42
VIT_12s0134g00510.t01	Wine grape	plastid	73.16	74.78
Bra034200.1-P	Field mustard	plastid	74.46	74.46
CDY22118	Canola	plastid	74.46	74.46
Bra000837.1-P	Field mustard	plastid	73.59	73.59
CDX90891	Canola	plastid	73.59	73.59
CDY17951	Canola	plastid	73.59	73.59
CDY21952	Canola	plastid	73.59	73.59
Os07t0556200-01	Rice	plastid	71.43	73.33
EES19551	Sorghum	plastid	71.43	73.01
Zm00001d053432_P001	Maize	plastid	71.43	72.69
TraesCS2A01G207900.1	Wheat	plastid	69.7	72.52
TraesCS2B01G234500.1	Wheat	plastid	69.7	72.52
TraesCS2D01G214700.1	Wheat	plastid	69.7	72.52
Zm00001d016134_P002	Maize	plastid	69.26	70.8
GSMUA_Achr10P...	Banana	plastid	63.64	68.37
HORVU2Hr1G041610.3	Barley	plastid	67.53	67.53

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	Gene3D:2.102.10.10	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0006091	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009496	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0010196
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900
GO:GO:0042651	GO:GO:0042742	GO:GO:0045158	GO:GO:0051537	GO:GO:0055114	GO:GO:0080167
InterPro:IPR017941	InterPro:IPR036922	UniProt:K4DBA1	HAMAP:MF_01335	PFAM:PF00355	PFAM:PF08802
PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF5	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	SUPFAM:SSF50022	EnsemblPlantsGene:Solyc12g005630.1	EnsemblPlants:Solyc12g005630.1.1	TMHMM:TMhelix
UniParc:UPI000276A491	SEG:seg	:	:	:	:

Description

Cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G03280) UniProtKB/Swiss-Prot;Acc:Q9ZR03]

Coordinates

chr12:-:334079..336443

Molecular Weight (calculated)

24332.3 Da

IEP (calculated)

8.135

GRAVY (calculated)

-0.094

Length

231 amino acids

Sequence
(BLAST)

001: MASSTLSHVT PSQLCSSKSG ISSVSQALLV KPMKINGHGM GKDNKRMKVK CMAASIPADD RVPDMEKRNL MNLLLLGALA LPTGGMLVPY ATFFAPPGSG
101: GGSGGTPAKD ANGNDVVVTE WLKTHAPGTR TLTQGLKGDP TYLVVENDGT LATYGINAVC THLGCVVPWN TAENKFICPC HGSQYNNQGK VVRGPAPLSL
201: ALAHADVDDG KVVFVPWVET DFRTGDAPWW A

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.