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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 17189339
plastid: 21433289
plastid: 27126603
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
msms PMID: 27126603 doi
Y Wang, K Ji, S Shen, H Chen
Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0751600-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G03280.1 Os02t0751600-01 AT4G39710.1 12424338
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2B01G234500.1 Wheat plastid 86.22 87.39
TraesCS2D01G214700.1 Wheat plastid 85.78 86.94
TraesCS2A01G207900.1 Wheat plastid 85.78 86.94
Zm00001d053432_P001 Maize plastid 86.67 85.9
EES19551 Sorghum plastid 86.22 85.84
Zm00001d016134_P002 Maize plastid 85.78 85.4
VIT_03s0017g00940.t01 Wine grape mitochondrion 68.89 79.9
HORVU2Hr1G041610.3 Barley plastid 79.56 77.49
GSMUA_Achr9P24590_001 Banana plastid 77.33 76.32
VIT_19s0014g03850.t01 Wine grape plastid 75.56 74.56
KRH22477 Soybean nucleus, plastid 73.33 72.69
KRH26877 Soybean plastid 73.33 72.69
Solyc12g005630.1.1 Tomato plastid 73.33 71.43
VIT_12s0134g00510.t01 Wine grape plastid 71.56 71.24
PGSC0003DMT400035747 Potato plastid 72.44 70.87
GSMUA_Achr10P... Banana plastid 67.11 70.23
CDY17951 Canola plastid 71.11 69.26
CDX90891 Canola plastid 71.11 69.26
Bra000837.1-P Field mustard plastid 71.11 69.26
AT4G03280.1 Thale cress plastid 70.22 69.0
CDY22118 Canola plastid 69.78 67.97
Bra034200.1-P Field mustard plastid 69.78 67.97
CDY21952 Canola plastid 69.33 67.53
Protein Annotations
KEGG:00195+1.10.9.1MapMan:1.1.2.3Gene3D:1.20.5.700Gene3D:2.102.10.10EntrezGene:4343570EMBL:AF093631
EMBL:AK071634ProteinID:BAD30907.1ProteinID:BAF21876.1ProteinID:BAT02104.1InterPro:Cyt_b6-f_cplx_Fe-S_suInterPro:Cyt_b6_f_Rieske
ProteinID:EAZ22943.1GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006091GO:GO:0008150GO:GO:0008152GO:GO:0009496
GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009987GO:GO:0015979
GO:GO:0016020GO:GO:0016021GO:GO:0016491GO:GO:0016679GO:GO:0022900GO:GO:0042651
GO:GO:0045158GO:GO:0046872GO:GO:0051536GO:GO:0051537GO:GO:0055114InterPro:IPR017941
InterPro:IPR036922HAMAP:MF_01335EnsemblPlantsGene:Os07g0556200EnsemblPlants:Os07t0556200-01PFAM:PF00355PFAM:PF08802
PRINTS:PR00162PFscan:PS51296PANTHER:PTHR10134PANTHER:PTHR10134:SF5UniProt:Q69S39InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sfInterPro:Rieske_Fe-S_protInterPro:Rieske_Fe-S_prot_CSUPFAM:SSF50022TMHMM:TMhelixUniParc:UPI00000A0930
RefSeq:XP_015647138.1:::::
Description
PetCRieske [2Fe-2S] region domain containing protein. (Os07t0556200-01)
Coordinates
chr7:+:22184407..22186890
Molecular Weight (calculated)
23885.7 Da
IEP (calculated)
8.374
GRAVY (calculated)
-0.080
Length
225 amino acids
Sequence
(BLAST)
001: MASTALSTAS NPTQLCRSRA SLGKPVKGLG FGRERVPRTA TTITCQAASS IPADRVPDMG KRQLMNLLLL GAISLPTVGM LVPYGAFFIP AGSGNAGGGQ
101: VAKDKLGNDV LAEEWLKTHG PNDRTLTQGL KGDPTYLVVE ADKTLATYGI NAVCTHLGCV VPWNAAENKF ICPCHGSQYN NQGRVVRGPA PLSLALVHAD
201: VDDGKVLFVP WVETDFRTGD NPWWA
Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)
001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS
Arabidopsis Description
PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.