Factsheet for VIT_19s0014g03850.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g00940.t01	Wine grape	mitochondrion	81.14	95.36
GSMUA_Achr9P24590_001	Banana	plastid	80.7	80.7
VIT_12s0134g00510.t01	Wine grape	plastid	77.63	78.32
Os07t0556200-01	Rice	plastid	74.56	75.56
EES19551	Sorghum	plastid	72.37	73.01
Zm00001d053432_P001	Maize	plastid	71.05	71.37
Zm00001d016134_P002	Maize	plastid	70.61	71.24
TraesCS2A01G207900.1	Wheat	plastid	68.42	70.27
TraesCS2B01G234500.1	Wheat	plastid	68.42	70.27
TraesCS2D01G214700.1	Wheat	plastid	68.42	70.27
GSMUA_Achr10P...	Banana	plastid	65.79	69.77
HORVU2Hr1G041610.3	Barley	plastid	67.54	66.67

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	EntrezGene:100245219	wikigene:100245219	EntrezGene:100258879
wikigene:100258879	Gene3D:2.102.10.10	UniProt:A5BX41	EMBL:AM474316	ProteinID:CAN66108	ProteinID:CAN66108.1
ProteinID:CBI20394	ProteinID:CBI20394.3	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske	EMBL:FN595229	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009496	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900	GO:GO:0042651
GO:GO:0045158	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	EntrezGene:LOC100245219
wikigene:LOC100245219	EntrezGene:LOC100258879	wikigene:LOC100258879	HAMAP:MF_01335	PFAM:PF00355	PFAM:PF08802
PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF5	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	SUPFAM:SSF50022	TIGR:TC52245	TMHMM:TMhelix	UniParc:UPI0001521D29
ArrayExpress:VIT_19s0014g03850	EnsemblPlantsGene:VIT_19s0014g03850	EnsemblPlants:VIT_19s0014g03850.t01	unigene:Vvi.6860	RefSeq:XP_002284361	RefSeq:XP_002284361.1

Description

Cytochrome b6-f complex iron-sulfur subunit [Source:UniProtKB/TrEMBL;Acc:A5BX41]

Coordinates

chr19:-:3942870..3944937

Molecular Weight (calculated)

24077.1 Da

IEP (calculated)

8.375

GRAVY (calculated)

-0.006

Length

228 amino acids

Sequence
(BLAST)

001: MAASTLSPAT SSQLCSIRNG VLSPSHALLP KLTRTSPFVG KGKGLKIKCQ ATSIPADRVP DMGKRKLMNL LLLGAISLPS AGMLIPYATF FAPPGTGSAG
101: GGIVAKDALG NDVIADEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNAAE NKFICPCHGS QYNNQGRVVR GPAPLSLALA
201: HADIDDGKVL FVPWVETDFR TGEDPWWA

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.