Factsheet for TraesCS2D01G214700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 18071923
plastid: 19643044
plastid: 22160430
plastid: 22736107
golgi: 25769308
plastid: 28542341

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19643044 doi

DY Hou, H Xu, GY Du, JT Lin, M Duan, AG Guo

College of Life Science, Northwest A&F University, Yangling, Shaanxi 712100, P. R. China.

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G302500.1
TraesCS6B01G331700.1
TraesCS6D01G282000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	TraesCS6A01G302500.1	AT4G39710.1	12424338
AT4G03280.1	TraesCS6B01G331700.1	AT4G39710.1	12424338
AT4G03280.1	TraesCS6D01G282000.1	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G234500.1	Wheat	plastid	99.55	99.55
TraesCS2A01G207900.1	Wheat	plastid	99.1	99.1
HORVU2Hr1G041610.3	Barley	plastid	93.69	90.04
Os07t0556200-01	Rice	plastid	86.94	85.78
Zm00001d016134_P002	Maize	plastid	84.68	83.19
EES19551	Sorghum	plastid	84.23	82.74
Zm00001d053432_P001	Maize	plastid	84.23	82.38
VIT_03s0017g00940.t01	Wine grape	mitochondrion	64.41	73.71
GSMUA_Achr9P24590_001	Banana	plastid	73.42	71.49
KRH22477	Soybean	nucleus, plastid	71.62	70.04
KRH26877	Soybean	plastid	71.62	70.04
Solyc12g005630.1.1	Tomato	plastid	72.52	69.7
PGSC0003DMT400035747	Potato	plastid	71.62	69.13
VIT_19s0014g03850.t01	Wine grape	plastid	70.27	68.42
GSMUA_Achr10P...	Banana	plastid	65.77	67.91
VIT_12s0134g00510.t01	Wine grape	plastid	68.47	67.26
AT4G03280.1	Thale cress	plastid	68.02	65.94
CDY17951	Canola	plastid	68.47	65.8
CDY22118	Canola	plastid	68.02	65.37
CDX90891	Canola	plastid	68.02	65.37
Bra034200.1-P	Field mustard	plastid	68.02	65.37
Bra000837.1-P	Field mustard	plastid	68.02	65.37
CDY21952	Canola	plastid	67.57	64.94

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	Gene3D:2.102.10.10	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009496	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016491	GO:GO:0016679	GO:GO:0042651	GO:GO:0045158	GO:GO:0051537
GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	HAMAP:MF_01335	PFAM:PF00355	PFAM:PF08802
PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF5	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	SUPFAM:SSF50022	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2D01G214700	EnsemblPlants:TraesCS2D01G214700.1
TIGR:cd03471	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:176163193..176164192

Molecular Weight (calculated)

23727.6 Da

IEP (calculated)

8.283

GRAVY (calculated)

-0.069

Length

222 amino acids

Sequence
(BLAST)

001: MASTALSTAS NPTQLCRTRA SSLCKPVKGL GFGRERIPRN ITCMAGSISA DRVPDMSKRE LMNLLLLGAI SLPTFGMLVP YGSFLVPAGS GSNAGGVAAK
101: DKLGNDILVE DWLKTHGPND RTLAQGLKGD PTYLVVESDK TLATYGINAV CTHLGCVVPW NAAENKFLCP CHGSQYNNQG KVVRGPAPLS LALVHADVDD
201: GKVVFVPWVE TDFRTGDNPW WK

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.