Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02095 | Canola | nucleus | 96.96 | 97.26 |
| Bra012909.1-P | Field mustard | nucleus | 96.66 | 96.95 |
| CDX83112 | Canola | nucleus | 85.11 | 79.55 |
| CDX68573 | Canola | nucleus | 84.19 | 78.69 |
| AT3G50070.1 | Thale cress | nucleus | 81.46 | 74.24 |
| CDY30607 | Canola | nucleus | 77.2 | 71.95 |
| CDY17742 | Canola | nucleus | 76.6 | 70.99 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 33.74 | 64.53 |
| CDY01425 | Canola | nucleus | 69.0 | 64.12 |
| CDY12825 | Canola | nucleus | 69.0 | 63.41 |
| KRH04529 | Soybean | nucleus | 53.19 | 47.17 |
| KRH57973 | Soybean | nucleus | 52.89 | 45.43 |
| Solyc02g092980.2.1 | Tomato | nucleus | 48.33 | 44.29 |
| KRH77050 | Soybean | nucleus, plastid | 44.68 | 44.01 |
| KRH28424 | Soybean | nucleus | 44.68 | 43.88 |
| PGSC0003DMT400064307 | Potato | nucleus | 47.72 | 43.25 |
| PGSC0003DMT400031329 | Potato | nucleus | 41.95 | 42.86 |
| PGSC0003DMT400068629 | Potato | cytosol | 31.0 | 42.5 |
| CDX75405 | Canola | nucleus | 45.59 | 40.21 |
| CDY69708 | Canola | nucleus | 45.59 | 40.11 |
| CDX72453 | Canola | nucleus | 43.77 | 40.0 |
| CDY49278 | Canola | nucleus | 44.68 | 39.84 |
| CDX76265 | Canola | nucleus | 43.77 | 39.45 |
| CDY57741 | Canola | nucleus | 43.47 | 39.18 |
| Solyc02g064900.1.1 | Tomato | nucleus | 41.03 | 39.02 |
| Solyc02g064860.1.1 | Tomato | nucleus | 26.14 | 36.6 |
| PGSC0003DMT400068627 | Potato | nucleus | 34.04 | 36.36 |
| Solyc02g064910.1.1 | Tomato | nucleus | 25.53 | 35.74 |
| PGSC0003DMT400011487 | Potato | nucleus | 19.15 | 34.24 |
| CDY38800 | Canola | nucleus | 30.09 | 31.03 |
| CDY11608 | Canola | nucleus | 29.79 | 30.91 |
| CDY13755 | Canola | nucleus | 27.36 | 30.82 |
| CDX81286 | Canola | nucleus | 24.62 | 30.45 |
| CDY54717 | Canola | nucleus | 24.01 | 29.7 |
| CDY67142 | Canola | nucleus | 30.4 | 29.5 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.96 | 29.02 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 30.4 | 28.49 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 30.4 | 28.25 |
| CDY59943 | Canola | nucleus | 30.7 | 27.98 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 30.09 | 27.97 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 30.09 | 27.97 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 32.83 | 27.84 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 30.4 | 27.62 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 28.88 | 27.54 |
| Os09t0111100-01 | Rice | cytosol | 30.4 | 27.47 |
| CDX76917 | Canola | nucleus | 29.18 | 27.12 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 32.83 | 26.54 |
| CDX89480 | Canola | nucleus | 28.27 | 26.2 |
| CDY14561 | Canola | cytosol | 25.84 | 26.15 |
| CDY25602 | Canola | nucleus | 28.27 | 26.12 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 32.22 | 26.04 |
| CDY08795 | Canola | nucleus | 24.32 | 25.97 |
| CDY33959 | Canola | nucleus | 24.01 | 25.9 |
| CDY37828 | Canola | nucleus | 24.32 | 25.89 |
| CDX97009 | Canola | nucleus | 22.8 | 25.6 |
| CDX69832 | Canola | nucleus | 23.1 | 25.59 |
| Zm00001d019696_P001 | Maize | cytosol | 29.79 | 25.32 |
| EER96424 | Sorghum | cytosol | 28.57 | 24.61 |
| Zm00001d005293_P001 | Maize | cytosol | 28.57 | 24.04 |
| CDY29570 | Canola | nucleus | 22.49 | 22.16 |
| CDY22116 | Canola | nucleus | 19.45 | 21.48 |
| CDX72643 | Canola | nucleus | 22.19 | 21.47 |
| CDY21951 | Canola | nucleus | 19.45 | 21.19 |
| CDY55121 | Canola | cytosol | 21.58 | 20.7 |
| CDY40332 | Canola | cytosol | 20.36 | 19.71 |
| CDY10467 | Canola | cytosol | 20.06 | 19.47 |
| CDX90892 | Canola | nucleus | 8.51 | 18.42 |
| CDX80803 | Canola | cytosol | 21.88 | 15.96 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078GDD5 | UniProt:A0A078GDD5 | EnsemblPlants:CDY23022 | ProteinID:CDY23022 |
| ProteinID:CDY23022.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00021477001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF216 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EF3ED4 | SEG:seg | : | : | : |
Description
BnaC07g31650DBnaC07g31650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDD5]
Coordinates
chrLK032139:+:132140..133634
Molecular Weight (calculated)
38140.7 Da
IEP (calculated)
5.163
GRAVY (calculated)
-0.198
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEEEEETQ NAPFCMLFCE EESISVFEED ESVVKSPSFH LGFPDHDMLW DDDELLGLIS KQDELKPCLS DKALDEFKSL CRENALGWIF RVKGYYGFSS
101: LTALLAVNYF DRFITSRKFQ TDKPWMSQLT AVACLSLAAK VEEIRVPLLL DLQVGEARYV FEAKTIQRME LLILSTLQWR MHPVTPISFF DHIIRRYSFN
201: SHEFFSRCES LLLSIVHDSR FLSYTPSVLA TAIMVSVARD FKEAEYESQL MTLLKVDPEK VNKCYELVLD HNPSKKRMMH ASLSSDGSNE SWVVSSEPLY
301: KRRRVHEQQM KLSSINRMFL DVFTSSSPR
101: LTALLAVNYF DRFITSRKFQ TDKPWMSQLT AVACLSLAAK VEEIRVPLLL DLQVGEARYV FEAKTIQRME LLILSTLQWR MHPVTPISFF DHIIRRYSFN
201: SHEFFSRCES LLLSIVHDSR FLSYTPSVLA TAIMVSVARD FKEAEYESQL MTLLKVDPEK VNKCYELVLD HNPSKKRMMH ASLSSDGSNE SWVVSSEPLY
301: KRRRVHEQQM KLSSINRMFL DVFTSSSPR
001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
Arabidopsis Description
CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.