Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G165900.1 | Wheat | cytosol | 97.74 | 97.74 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 97.46 | 97.46 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 93.5 | 94.3 |
| Zm00001d019696_P001 | Maize | cytosol | 75.14 | 68.73 |
| Os09t0111100-01 | Rice | cytosol | 69.21 | 67.31 |
| EER96424 | Sorghum | cytosol | 72.6 | 67.28 |
| Zm00001d005293_P001 | Maize | cytosol | 72.88 | 65.98 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 44.63 | 40.72 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 40.4 | 39.5 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 37.29 | 38.26 |
| VIT_07s0129g01100.t01 | Wine grape | nucleus | 33.33 | 38.19 |
| GSMUA_AchrUn_... | Banana | cytosol | 33.05 | 36.91 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 42.09 | 36.61 |
| PGSC0003DMT400039904 | Potato | nucleus | 31.64 | 34.78 |
| Solyc12g088650.1.1 | Tomato | nucleus | 31.36 | 34.15 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 38.42 | 33.42 |
| PGSC0003DMT400020648 | Potato | nucleus | 31.07 | 33.13 |
| VIT_03s0180g00040.t01 | Wine grape | nucleus | 35.31 | 32.38 |
| KRH05626 | Soybean | cytosol | 19.49 | 32.09 |
| KRH15412 | Soybean | cytosol | 23.73 | 31.11 |
| Solyc04g078470.2.1 | Tomato | nucleus | 29.38 | 30.95 |
| KRH28424 | Soybean | nucleus | 29.1 | 30.75 |
| KRH04529 | Soybean | nucleus | 32.2 | 30.73 |
| PGSC0003DMT400066557 | Potato | nucleus | 31.07 | 30.73 |
| VIT_18s0001g09920.t01 | Wine grape | nucleus | 32.2 | 30.65 |
| CDY30607 | Canola | nucleus | 30.51 | 30.59 |
| Bra036051.1-P | Field mustard | nucleus | 30.51 | 30.59 |
| CDY02095 | Canola | nucleus | 28.25 | 30.49 |
| Bra012909.1-P | Field mustard | nucleus | 28.25 | 30.49 |
| Bra029992.1-P | Field mustard | nucleus | 30.23 | 30.4 |
| CDX83112 | Canola | nucleus | 30.23 | 30.4 |
| Solyc01g107730.2.1 | Tomato | nucleus | 31.07 | 30.22 |
| CDY17742 | Canola | nucleus | 30.23 | 30.14 |
| CDY57741 | Canola | nucleus | 31.07 | 30.14 |
| CDX68573 | Canola | nucleus | 29.94 | 30.11 |
| CDY23022 | Canola | nucleus | 27.97 | 30.09 |
| KRH57973 | Soybean | nucleus | 32.49 | 30.03 |
| CDX72453 | Canola | nucleus | 30.51 | 30.0 |
| PGSC0003DMT400068629 | Potato | cytosol | 20.34 | 30.0 |
| CDX76265 | Canola | nucleus | 30.79 | 29.86 |
| CDY49278 | Canola | nucleus | 31.07 | 29.81 |
| Solyc02g092980.2.1 | Tomato | nucleus | 30.23 | 29.8 |
| KRH61348 | Soybean | nucleus | 29.38 | 29.8 |
| Solyc02g064860.1.1 | Tomato | nucleus | 19.77 | 29.79 |
| Solyc02g064910.1.1 | Tomato | nucleus | 19.77 | 29.79 |
| Solyc02g064900.1.1 | Tomato | nucleus | 29.1 | 29.77 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 14.41 | 29.65 |
| Bra017629.1-P | Field mustard | nucleus | 30.79 | 29.62 |
| PGSC0003DMT400064307 | Potato | nucleus | 30.23 | 29.48 |
| Bra012146.1-P | Field mustard | nucleus | 29.38 | 29.38 |
| CDY01425 | Canola | nucleus | 29.38 | 29.38 |
| Bra034612.1-P | Field mustard | nucleus | 30.51 | 29.35 |
| TraesCS5A01G068600.1 | Wheat | nucleus | 29.1 | 29.34 |
| KRH77050 | Soybean | nucleus, plastid | 27.68 | 29.34 |
| CDY12825 | Canola | nucleus | 29.66 | 29.33 |
| KRH52038 | Soybean | nucleus | 29.94 | 29.28 |
| Bra011501.1-P | Field mustard | nucleus | 30.79 | 29.22 |
| CDX75405 | Canola | nucleus | 30.79 | 29.22 |
| CDY69708 | Canola | nucleus | 30.79 | 29.14 |
| AT3G50070.1 | Thale cress | nucleus | 29.66 | 29.09 |
| AT4G34160.1 | Thale cress | nucleus | 30.79 | 28.99 |
| TraesCS5A01G246800.1 | Wheat | nucleus | 28.81 | 28.9 |
| PGSC0003DMT400031329 | Potato | nucleus | 26.27 | 28.88 |
| TraesCS5A01G247000.1 | Wheat | nucleus | 28.81 | 28.73 |
| KRG90996 | Soybean | nucleus | 31.36 | 28.24 |
| KRH35760 | Soybean | nucleus | 31.64 | 27.86 |
| PGSC0003DMT400011487 | Potato | nucleus | 14.12 | 27.17 |
| TraesCS5A01G200500.2 | Wheat | nucleus | 24.58 | 26.85 |
| TraesCS4A01G046900.1 | Wheat | nucleus | 26.55 | 26.78 |
| AT5G67260.2 | Thale cress | nucleus | 30.23 | 26.49 |
| PGSC0003DMT400068627 | Potato | nucleus | 22.88 | 26.3 |
| TraesCS4A01G234600.1 | Wheat | cytosol | 24.58 | 25.82 |
| TraesCS2A01G164800.1 | Wheat | nucleus | 24.58 | 25.22 |
| TraesCS4A01G177400.1 | Wheat | cytosol | 23.16 | 24.62 |
| VIT_00s0194g00280.t01 | Wine grape | mitochondrion | 19.77 | 24.56 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 24.58 | 24.3 |
| TraesCS2A01G208300.1 | Wheat | nucleus, peroxisome, plasma membrane | 18.64 | 21.29 |
| TraesCS7A01G479000.1 | Wheat | cytosol, nucleus, plastid | 6.5 | 19.17 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G161000.1 | EnsemblPlantsGene:TraesCS5A01G161000 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF342 | PFAM:PF00134 | SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 |
| MapMan:13.1.1.1.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:342355813..342357088
Molecular Weight (calculated)
37504.4 Da
IEP (calculated)
4.617
GRAVY (calculated)
0.044
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAALFVDS LYCPEEHHDL FQEPAEEQWP DQQPLVALDD ELPALFEVFR GKEEVLLREG GDGYGGDARR QAAVGWATRA AARLGFSALT AALAAAYLDR
101: CFLSGGALRL GDQPWMARLA AVACVALAAK VEETRVPVLL DLQLCAAESA GDADVFDAKT VRRMELLVLS ALAWRMHPVT PFSFLHPVLA AARLRQCESV
201: LLAVMPDWSW PRYRPSAWAA AALLATAGYG SGDGDAELLA LINAPEDEVA ECVKILSGEA AAGFMGFGGD NKRKRAAAGL HSPPLSPSGV IGAAAYFSCE
301: SSSSSADSRS GAATAWPGSV SVSSSPEPAG RPLKRATATA MMLPPDEESR DAWR
101: CFLSGGALRL GDQPWMARLA AVACVALAAK VEETRVPVLL DLQLCAAESA GDADVFDAKT VRRMELLVLS ALAWRMHPVT PFSFLHPVLA AARLRQCESV
201: LLAVMPDWSW PRYRPSAWAA AALLATAGYG SGDGDAELLA LINAPEDEVA ECVKILSGEA AAGFMGFGGD NKRKRAAAGL HSPPLSPSGV IGAAAYFSCE
301: SSSSSADSRS GAATAWPGSV SVSSSPEPAG RPLKRATATA MMLPPDEESR DAWR
001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
Arabidopsis Description
CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.