Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 98.06 | 97.12 |
| HORVU0Hr1G003280.5 | Barley | cytosol, mitochondrion, nucleus | 74.52 | 92.03 |
| TraesCS2B01G234800.1 | Wheat | cytosol, nucleus, plasma membrane | 98.71 | 89.74 |
| EER99528 | Sorghum | cytosol | 77.74 | 76.75 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 75.48 | 76.22 |
| Os07t0556000-01 | Rice | cytosol | 78.39 | 75.94 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 37.74 | 70.91 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 45.48 | 46.38 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 41.94 | 43.33 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 34.84 | 43.03 |
| VIT_12s0134g00500.t01 | Wine grape | nucleus | 37.42 | 39.46 |
| KRH10729 | Soybean | nucleus | 31.94 | 36.4 |
| Solyc02g079370.2.1 | Tomato | nucleus | 34.52 | 36.03 |
| PGSC0003DMT400057686 | Potato | cytosol, nucleus, plasma membrane | 34.52 | 35.67 |
| KRH21593 | Soybean | nucleus | 30.97 | 35.29 |
| KRH26876 | Soybean | nucleus | 35.81 | 35.24 |
| Bra034198.1-P | Field mustard | nucleus | 33.55 | 34.9 |
| CDY22116 | Canola | nucleus | 33.55 | 34.9 |
| KRH22479 | Soybean | cytosol | 35.48 | 34.81 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 46.13 | 33.89 |
| VIT_00s0203g00160.t01 | Wine grape | cytosol | 34.52 | 33.86 |
| CDY21951 | Canola | nucleus | 32.58 | 33.44 |
| PGSC0003DMT400039033 | Potato | nucleus | 32.9 | 32.8 |
| PGSC0003DMT400012934 | Potato | nucleus | 31.61 | 32.34 |
| AT4G03270.1 | Thale cress | nucleus | 30.97 | 31.79 |
| Solyc07g054950.1.1 | Tomato | nucleus | 31.61 | 31.61 |
| Solyc03g006670.2.1 | Tomato | nucleus | 31.61 | 31.51 |
| CDX90892 | Canola | nucleus | 15.16 | 30.92 |
| KRH56054 | Soybean | cytosol, nucleus, plasma membrane | 31.61 | 29.79 |
| KRH25470 | Soybean | nucleus | 30.97 | 29.63 |
| TraesCS5A01G200500.2 | Wheat | nucleus | 27.74 | 26.54 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 30.0 | 25.98 |
| TraesCS5A01G246800.1 | Wheat | nucleus | 28.06 | 24.65 |
| TraesCS5A01G247000.1 | Wheat | nucleus | 27.74 | 24.23 |
| TraesCS4A01G177400.1 | Wheat | cytosol | 24.52 | 22.82 |
| TraesCS2A01G164800.1 | Wheat | nucleus | 25.16 | 22.61 |
| TraesCS4A01G234600.1 | Wheat | cytosol | 21.94 | 20.18 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 21.29 | 18.64 |
| TraesCS4A01G046900.1 | Wheat | nucleus | 20.97 | 18.52 |
| TraesCS5A01G068600.1 | Wheat | nucleus | 20.32 | 17.95 |
| TraesCS7A01G479000.1 | Wheat | cytosol, nucleus, plastid | 4.52 | 11.67 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_D_plant |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051726 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF240 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | EnsemblPlantsGene:TraesCS2A01G208300 |
| EnsemblPlants:TraesCS2A01G208300.1 | TIGR:cd00043 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2A:+:189601166..189602774
Molecular Weight (calculated)
33484.1 Da
IEP (calculated)
5.654
GRAVY (calculated)
0.050
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMPGEDEYV YGYEYEFDLE NPFTSPADEP IASLLDAEAH HAPSVSAAAS AVRRDAARFI SKVRYDGELA VHPRVAYLAL NYVDRFLSKG QLPFERKPWA
101: PRLLAISCLS IAAKMQRVDA ISMDYIQRDE EFMFDAATIR RMERVVLGAL EWRARSVTPL AFLGFFLSAC FPPPRHPALL DAVKERAVDL LLRAQPEVKM
201: AEFSPSVVAA SALLAAAGEI AVAHLPAFQA AVAACPFEKL RECGEVMAAV CGVVGVGVGP AASAETPVTV LGHGHYRSAS SESDRTVGSA ANVADAKKRC
301: MGPPSQSQWG
101: PRLLAISCLS IAAKMQRVDA ISMDYIQRDE EFMFDAATIR RMERVVLGAL EWRARSVTPL AFLGFFLSAC FPPPRHPALL DAVKERAVDL LLRAQPEVKM
201: AEFSPSVVAA SALLAAAGEI AVAHLPAFQA AVAACPFEKL RECGEVMAAV CGVVGVGVGP AASAETPVTV LGHGHYRSAS SESDRTVGSA ANVADAKKRC
301: MGPPSQSQWG
001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
Arabidopsis Description
CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.