Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g079370.2.1 | Tomato | nucleus | 93.67 | 94.61 |
| PGSC0003DMT400012934 | Potato | nucleus | 60.67 | 60.07 |
| KRH10729 | Soybean | nucleus | 42.33 | 46.69 |
| KRH21593 | Soybean | nucleus | 41.67 | 45.96 |
| VIT_00s0203g00160.t01 | Wine grape | cytosol | 47.0 | 44.62 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 36.0 | 43.03 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 43.0 | 42.43 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 39.67 | 39.67 |
| PGSC0003DMT400039033 | Potato | nucleus | 39.67 | 38.26 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 30.67 | 38.02 |
| HORVU0Hr1G003280.5 | Barley | cytosol, mitochondrion, nucleus | 30.67 | 36.65 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 35.33 | 34.53 |
| TraesCS2A01G208300.1 | Wheat | nucleus, peroxisome, plasma membrane | 35.67 | 34.52 |
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 36.0 | 34.5 |
| EER99528 | Sorghum | cytosol | 35.0 | 33.44 |
| Os07t0556000-01 | Rice | cytosol | 34.0 | 31.88 |
| TraesCS2B01G234800.1 | Wheat | cytosol, nucleus, plasma membrane | 36.0 | 31.67 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 43.0 | 30.57 |
| PGSC0003DMT400040287 | Potato | nucleus | 30.0 | 26.79 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 14.33 | 26.06 |
| PGSC0003DMT400088718 | Potato | nucleus | 25.33 | 24.52 |
| PGSC0003DMT400033588 | Potato | nucleus | 28.67 | 24.16 |
| PGSC0003DMT400020648 | Potato | nucleus | 24.67 | 22.29 |
| PGSC0003DMT400037827 | Potato | nucleus | 25.0 | 21.8 |
| PGSC0003DMT400066557 | Potato | nucleus | 25.33 | 21.23 |
| PGSC0003DMT400039904 | Potato | nucleus | 22.67 | 21.12 |
| PGSC0003DMT400068629 | Potato | cytosol | 16.67 | 20.83 |
| PGSC0003DMT400031329 | Potato | nucleus | 21.33 | 19.88 |
| PGSC0003DMT400011487 | Potato | nucleus | 11.33 | 18.48 |
| PGSC0003DMT400064307 | Potato | nucleus | 22.0 | 18.18 |
| PGSC0003DMT400041637 | Potato | nucleus | 23.0 | 17.51 |
| PGSC0003DMT400068627 | Potato | nucleus | 17.67 | 17.21 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:102583955 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_D_plant | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051726 | UniProt:M1C1H3 | PFAM:PF00134 |
| PFAM:PF02984 | EnsemblPlantsGene:PGSC0003DMG400022397 | PGSC:PGSC0003DMG400022397 | EnsemblPlants:PGSC0003DMT400057686 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF240 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000296F73F | RefSeq:XP_006347185.1 |
| SEG:seg | : | : | : | : | : |
Description
D6-type cyclin [Source:PGSC_GENE;Acc:PGSC0003DMG400022397]
Coordinates
chr2:+:35091251..35093679
Molecular Weight (calculated)
34686.5 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.150
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFDLHNPLT GFEEYHFDAV SALFANESDH MPSFLDFKST DVRFSLRRHS VFLISQVQSS YKFDGYIAYL AVNYIDRFLS KQAVLENKPW IVRILVIVSL
101: SLAAKMRNVD LSLSDIQRDV GLNFDAQSIH RMESLILDTL KWRLRSITPF SFLHFFNSFL KLVDSSLTQS LKQRASDIIF STQYEIKLFE YKPSIIAASA
201: LLCAAEELIT LQFSSCLTAI SESQYSNKEE LMNALAVMRE MPIEGREYCS MLTPKSVLKC EHTSSQCETH TNQDRDTIKK RRLSDSRDDR TFQISQVQWC
101: SLAAKMRNVD LSLSDIQRDV GLNFDAQSIH RMESLILDTL KWRLRSITPF SFLHFFNSFL KLVDSSLTQS LKQRASDIIF STQYEIKLFE YKPSIIAASA
201: LLCAAEELIT LQFSSCLTAI SESQYSNKEE LMNALAVMRE MPIEGREYCS MLTPKSVLKC EHTSSQCETH TNQDRDTIKK RRLSDSRDDR TFQISQVQWC
001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
Arabidopsis Description
CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.