Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g087900.1.1 | Tomato | nucleus | 88.39 | 86.71 |
| PGSC0003DMT400033588 | Potato | nucleus | 54.84 | 47.75 |
| KRH52917 | Soybean | nucleus | 49.03 | 43.18 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 34.19 | 42.57 |
| VIT_18s0001g07220.t01 | Wine grape | nucleus | 48.06 | 41.97 |
| KRH16827 | Soybean | nucleus | 48.06 | 41.97 |
| KRH62196 | Soybean | nucleus | 46.77 | 41.19 |
| GSMUA_Achr10P... | Banana | nucleus | 42.58 | 41.12 |
| KRH72435 | Soybean | nucleus | 47.1 | 40.9 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 44.52 | 39.77 |
| PGSC0003DMT400037827 | Potato | nucleus | 42.9 | 38.66 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 42.9 | 38.44 |
| TraesCS6B01G345300.1 | Wheat | plastid | 43.23 | 37.96 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 42.26 | 37.75 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 42.58 | 37.71 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 43.55 | 37.4 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 42.26 | 37.32 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 42.9 | 37.15 |
| GSMUA_Achr10P... | Banana | nucleus | 40.97 | 36.92 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 42.58 | 36.87 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 41.29 | 36.68 |
| Zm00001d052185_P001 | Maize | nucleus | 42.26 | 36.39 |
| Zm00001d018128_P001 | Maize | nucleus | 41.29 | 36.06 |
| EES07560 | Sorghum | nucleus | 40.65 | 35.2 |
| PGSC0003DMT400041637 | Potato | nucleus | 41.29 | 32.49 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 26.13 | 32.14 |
| KXG19603 | Sorghum | nucleus | 34.52 | 30.75 |
| PGSC0003DMT400031329 | Potato | nucleus | 29.35 | 28.26 |
| PGSC0003DMT400068629 | Potato | cytosol | 21.61 | 27.92 |
| PGSC0003DMT400039904 | Potato | nucleus | 28.71 | 27.64 |
| PGSC0003DMT400064307 | Potato | nucleus | 31.94 | 27.27 |
| PGSC0003DMT400039033 | Potato | nucleus | 27.1 | 27.01 |
| PGSC0003DMT400020648 | Potato | nucleus | 28.06 | 26.2 |
| PGSC0003DMT400011487 | Potato | nucleus | 15.16 | 25.54 |
| PGSC0003DMT400057686 | Potato | cytosol, nucleus, plasma membrane | 24.52 | 25.33 |
| PGSC0003DMT400040287 | Potato | nucleus | 27.1 | 25.0 |
| PGSC0003DMT400068627 | Potato | nucleus | 24.52 | 24.68 |
| PGSC0003DMT400066557 | Potato | nucleus | 27.74 | 24.02 |
| PGSC0003DMT400012934 | Potato | nucleus | 20.97 | 21.45 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | UniProt:M1DGK3 | PFAM:PF00134 |
| PFAM:PF02984 | EnsemblPlantsGene:PGSC0003DMG400038289 | PGSC:PGSC0003DMG400038289 | EnsemblPlants:PGSC0003DMT400088718 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF213 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI000295EBF3 | SEG:seg |
Description
D2/4-type cyclin [Source:PGSC_GENE;Acc:PGSC0003DMG400038289]
Coordinates
chr12:-:55743410..55747756
Molecular Weight (calculated)
35026.1 Da
IEP (calculated)
4.438
GRAVY (calculated)
-0.112
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MLENVYDDMH TLFHGDHQNN QQTIPFQSDD CVALMIKKEC EYMCCDDYLE KLKNGEFDLG EREQILDWIC QVHSHFKFGP LCLYLSVNYL DRFLSVFELP
101: EERAWTMQLL AIACVSIAAK LEEVEVPLSE DLQIEGTQFE FEASTIQRME LLVLKTLNWR MHAITPFSFI GYFIKKINGD QIASTSTMFK ATNLIIGTLK
201: GIHFLEFKPS EIAAAVAIYD VVKNKTSGIE KAISTLIQQV QKDKVKKCVD LIKESSLLSD FGASTLMVPP SPTGVWDVAS SSDMSDDDSG PGSLDDGLLT
301: KRTKMDEMNE
101: EERAWTMQLL AIACVSIAAK LEEVEVPLSE DLQIEGTQFE FEASTIQRME LLVLKTLNWR MHAITPFSFI GYFIKKINGD QIASTSTMFK ATNLIIGTLK
201: GIHFLEFKPS EIAAAVAIYD VVKNKTSGIE KAISTLIQQV QKDKVKKCVD LIKESSLLSD FGASTLMVPP SPTGVWDVAS SSDMSDDDSG PGSLDDGLLT
301: KRTKMDEMNE
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQQERV KRCLNLMRSL TGEENVRGTS
301: LSQEQARVAV RAVPASPVGV LEATCLSYRS EERTVESCTN SSQSSPDNNN NNNNSNKRRR KQ
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQQERV KRCLNLMRSL TGEENVRGTS
301: LSQEQARVAV RAVPASPVGV LEATCLSYRS EERTVESCTN SSQSSPDNNN NNNNSNKRRR KQ
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.