Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400088718 | Potato | nucleus | 86.71 | 88.39 |
| Solyc04g076040.2.1 | Tomato | nucleus | 55.06 | 49.01 |
| VIT_18s0001g07220.t01 | Wine grape | nucleus | 49.37 | 43.94 |
| KRH52917 | Soybean | nucleus | 48.73 | 43.75 |
| KRH16827 | Soybean | nucleus | 48.73 | 43.38 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 33.86 | 42.97 |
| GSMUA_Achr10P... | Banana | nucleus | 43.35 | 42.68 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 46.84 | 42.65 |
| KRH72435 | Soybean | nucleus | 47.47 | 42.02 |
| KRH62196 | Soybean | nucleus | 46.52 | 41.76 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 44.62 | 40.29 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 45.25 | 39.94 |
| TraesCS6B01G345300.1 | Wheat | plastid | 44.62 | 39.94 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 43.67 | 39.88 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 43.35 | 39.48 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 43.67 | 39.32 |
| GSMUA_Achr10P... | Banana | nucleus | 42.72 | 39.24 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 44.3 | 39.11 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 43.04 | 38.97 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 44.3 | 38.78 |
| Zm00001d052185_P001 | Maize | nucleus | 43.35 | 38.06 |
| Solyc05g051410.2.1 | Tomato | nucleus | 41.14 | 37.79 |
| Zm00001d018128_P001 | Maize | nucleus | 42.41 | 37.75 |
| Solyc11g010460.1.1 | Tomato | cytosol | 36.71 | 37.18 |
| EES07560 | Sorghum | nucleus | 42.09 | 37.15 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 27.53 | 34.52 |
| KXG19603 | Sorghum | nucleus | 36.08 | 32.76 |
| Solyc02g092980.2.1 | Tomato | nucleus | 31.96 | 28.13 |
| Solyc12g088650.1.1 | Tomato | nucleus | 28.48 | 27.69 |
| Solyc04g078470.2.1 | Tomato | nucleus | 28.8 | 27.08 |
| Solyc02g064910.1.1 | Tomato | nucleus | 19.62 | 26.38 |
| Solyc02g064860.1.1 | Tomato | nucleus | 19.62 | 26.38 |
| Solyc02g064900.1.1 | Tomato | nucleus | 28.8 | 26.3 |
| Solyc07g054950.1.1 | Tomato | nucleus | 25.0 | 25.48 |
| Solyc01g107730.2.1 | Tomato | nucleus | 29.11 | 25.27 |
| Solyc02g079370.2.1 | Tomato | nucleus | 23.73 | 25.25 |
| Solyc05g006050.2.1 | Tomato | nucleus | 26.58 | 24.93 |
| Solyc03g006670.2.1 | Tomato | nucleus | 22.15 | 22.51 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | UniProt:K4DGL1 | PFAM:PF00134 |
| PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF213 | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | EnsemblPlantsGene:Solyc12g087900.1 | EnsemblPlants:Solyc12g087900.1.1 | UniParc:UPI000276A841 | SEG:seg |
Description
No Description!
Coordinates
chr12:-:63412953..63416111
Molecular Weight (calculated)
35554.6 Da
IEP (calculated)
4.317
GRAVY (calculated)
-0.031
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTRDFVIS GLFCAEYNKS MLENVYDDIH TLFHGDHQNN QQTMPFQSDD CVTLMIKKEC EYMCADDYLE KLKNGEFDLG EREQILDWIC QVHSHFKFGP
101: LCLYLSVNYL DRFLSVFELP EERAWTIQLL AIACVSIAAK LEEVEVPLSE DLQIEGTQFE FEASTIQRME LVVMKTLNWR MHAVTPFSFI DYFLKKIDGD
201: QIASKSIMFK ATNLIIGTLK GIDFLKFKPS EIAAAVAIYV VVKNKTGGIE DAISTLIQQV EKDKVNKCVD LIKESSLLSD FGASTLMVPP SPTGVWDVAS
301: SSDMSDDDSG PSSLDG
101: LCLYLSVNYL DRFLSVFELP EERAWTIQLL AIACVSIAAK LEEVEVPLSE DLQIEGTQFE FEASTIQRME LVVMKTLNWR MHAVTPFSFI DYFLKKIDGD
201: QIASKSIMFK ATNLIIGTLK GIDFLKFKPS EIAAAVAIYV VVKNKTGGIE DAISTLIQQV EKDKVNKCVD LIKESSLLSD FGASTLMVPP SPTGVWDVAS
301: SSDMSDDDSG PSSLDG
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQQERV KRCLNLMRSL TGEENVRGTS
301: LSQEQARVAV RAVPASPVGV LEATCLSYRS EERTVESCTN SSQSSPDNNN NNNNSNKRRR KQ
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQQERV KRCLNLMRSL TGEENVRGTS
301: LSQEQARVAV RAVPASPVGV LEATCLSYRS EERTVESCTN SSQSSPDNNN NNNNSNKRRR KQ
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.