Factsheet for Solyc02g092980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
nucleus 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g089970.2.1
Solyc01g096700.2.1
Solyc02g067810.1.1
Solyc02g086450.1.1
Solyc03g120010.2.1
Solyc05g050970.2.1
Solyc07g009140.2.1
Solyc08g066330.1.1
Solyc09g055420.1.1
Solyc10g018300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50070.1	Solyc03g120010.2.1	AT1G52730.1	20706207
AT3G50070.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT3G50070.1	Solyc05g050970.2.1	AT3G60750.1	20706207
AT3G50070.1	Solyc10g018300.1.1	AT3G60750.1	20706207
AT3G50070.1	Solyc01g089970.2.1	AT4G09320.1	20706207
AT3G50070.1	Solyc09g055420.1.1	AT4G09320.1	20706207
AT3G50070.1	Solyc07g009140.2.1	AT4G24820.1	20706207
AT3G50070.1	Solyc01g096700.2.1	AT5G06110.1	20706207
AT3G50070.1	Solyc02g067810.1.1	AT5G40460.1	20706207
AT3G50070.1	Solyc02g086450.1.1	AT5G40460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064307	Potato	nucleus	96.1	95.04
PGSC0003DMT400031329	Potato	nucleus	77.99	86.96
Solyc02g064900.1.1	Tomato	nucleus	62.4	64.74
Solyc02g064910.1.1	Tomato	nucleus	41.5	63.4
Solyc02g064860.1.1	Tomato	nucleus	41.23	62.98
Bra029992.1-P	Field mustard	nucleus	48.75	49.72
CDX68573	Canola	nucleus	48.75	49.72
CDX83112	Canola	nucleus	48.75	49.72
Solyc01g107730.2.1	Tomato	nucleus	50.14	49.45
Bra012909.1-P	Field mustard	nucleus	44.85	49.09
CDY02095	Canola	nucleus	44.85	49.09
AT3G50070.1	Thale cress	nucleus	49.03	48.75
KRH04529	Soybean	nucleus	50.14	48.52
CDY23022	Canola	nucleus	44.29	48.33
CDY12825	Canola	nucleus	48.19	48.32
CDY01425	Canola	nucleus	47.63	48.31
KRH57973	Soybean	nucleus	51.53	48.3
Bra012146.1-P	Field mustard	nucleus	46.52	47.18
Solyc12g088650.1.1	Tomato	nucleus	42.34	46.77
CDY30607	Canola	nucleus	45.96	46.74
Bra036051.1-P	Field mustard	nucleus	45.68	46.46
KRH77050	Soybean	nucleus, plastid	43.18	46.41
Solyc04g078470.2.1	Tomato	nucleus	42.9	45.83
KRH28424	Soybean	nucleus	42.62	45.67
CDY17742	Canola	nucleus	45.13	45.63
CDY30606	Canola	cytosol, nucleus, plastid	21.17	44.19
AT5G67260.2	Thale cress	nucleus	49.58	44.06
Solyc04g076040.2.1	Tomato	nucleus	35.65	36.06
Solyc05g051410.2.1	Tomato	nucleus	31.2	32.56
GSMUA_Achr1P09780_001	Banana	cytosol	34.82	32.22
GSMUA_Achr3P13140_001	Banana	nucleus	36.49	32.19
Solyc11g010460.1.1	Tomato	cytosol	27.86	32.05
Solyc12g087900.1.1	Tomato	nucleus	28.13	31.96
GSMUA_Achr4P20220_001	Banana	nucleus	32.03	31.77
GSMUA_Achr2P05260_001	Banana	nucleus	30.36	31.59
GSMUA_AchrUn_...	Banana	cytosol	27.02	30.6
HORVU5Hr1G050270.8	Barley	cytosol	29.8	30.48
TraesCS5D01G165900.1	Wheat	cytosol	29.8	30.23
TraesCS5B01G158400.1	Wheat	cytosol	29.8	30.23
TraesCS5A01G161000.1	Wheat	cytosol	29.8	30.23
GSMUA_Achr3P01010_001	Banana	nucleus	33.7	29.73
Solyc05g006050.2.1	Tomato	nucleus	27.3	29.08
Os09t0111100-01	Rice	cytosol	29.25	28.85
Zm00001d019696_P001	Maize	cytosol	28.97	26.87
EER96424	Sorghum	cytosol	27.58	25.92
Zm00001d005293_P001	Maize	cytosol	27.86	25.58
Solyc07g054950.1.1	Tomato	nucleus	20.33	23.55
Solyc02g079370.2.1	Tomato	nucleus	18.38	22.22
Solyc03g006670.2.1	Tomato	nucleus	17.27	19.94

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EMBL:AJ002588	EMBL:AJ245415	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF242
UniProt:Q9S7H9	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc02g092980.2	EnsemblPlants:Solyc02g092980.2.1
UniParc:UPI00000AD00F	SEG:seg	:	:	:	:

Description

CycD3;1 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7H9]

Coordinates

chr2:-:53932670..53934514

Molecular Weight (calculated)

40973.3 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.078

Length

359 amino acids

Sequence
(BLAST)

001: MVFPLDSQLQ NPISALLDGL YCEEDRFLDD DLGEWSSLDV GNENVKKTLP LLECDMFWEH DELATLLSKE NEFHLGFQSL ISDGSLMGAR KEALDWMLRV
101: IAYYGFTATT AVLAVNYFDR FVSGWCFQKD KPWMSQLAAV ACLSIAAKVE ETQVPLLLDL QVADSRFVFE AKTIQRMELL VLSTLKWKMN LVTPLSFIDH
201: IMRRFGFMSN LHMDFLKKCE RLILDIITDS RLLHYPPSVI ATASMFYVIN DIEPSNAMEY QNQLMSVLKV RKDIFEECHD LILELMDTAC YKLCQSLKRK
301: HHSVPGSPSG VIDAYFSSES SNESWSVASS ISSSPEPQYK RNKTQDQRMT LAPLGSNLH

Best Arabidopsis Sequence Match ( AT5G67260.1 )
(BLAST)

001: MALEKEEEAS QNGAFCVLDG LYCEEETGFV EDDLDDDGDL DFLEKSDESV VKFQFLPLLD MFLWDDDEIL SLISKENETN PCFGEQILDG FLVSCRKEAL
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRMFL DVLSSPR

Arabidopsis Description

CYCD3;2CYCLIN D3;2 [Source:TAIR;Acc:AT5G67260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.