Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G050270.8 | Barley | cytosol | 67.31 | 69.8 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 67.86 | 69.77 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 67.58 | 69.49 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 67.31 | 69.21 |
| EER96424 | Sorghum | cytosol | 66.76 | 63.61 |
| Zm00001d019696_P001 | Maize | cytosol | 67.58 | 63.57 |
| Zm00001d005293_P001 | Maize | cytosol | 67.03 | 62.4 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 44.23 | 41.49 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 38.74 | 38.95 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 36.81 | 38.84 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 41.48 | 37.1 |
| GSMUA_AchrUn_... | Banana | cytosol | 31.87 | 36.59 |
| VIT_07s0129g01100.t01 | Wine grape | nucleus | 31.04 | 36.57 |
| KRH05626 | Soybean | cytosol | 20.6 | 34.88 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 37.64 | 33.66 |
| PGSC0003DMT400039904 | Potato | nucleus | 28.02 | 31.68 |
| PGSC0003DMT400066557 | Potato | nucleus | 31.04 | 31.56 |
| Bra029992.1-P | Field mustard | nucleus | 30.49 | 31.53 |
| CDX83112 | Canola | nucleus | 30.49 | 31.53 |
| Solyc12g088650.1.1 | Tomato | nucleus | 28.02 | 31.38 |
| CDX68573 | Canola | nucleus | 30.22 | 31.25 |
| PGSC0003DMT400068629 | Potato | cytosol | 20.6 | 31.25 |
| KRH15412 | Soybean | cytosol | 23.08 | 31.11 |
| CDY02095 | Canola | nucleus | 28.02 | 31.1 |
| Bra012909.1-P | Field mustard | nucleus | 28.02 | 31.1 |
| PGSC0003DMT400020648 | Potato | nucleus | 28.3 | 31.02 |
| Solyc01g107730.2.1 | Tomato | nucleus | 30.77 | 30.77 |
| KRH28424 | Soybean | nucleus | 28.3 | 30.75 |
| CDY23022 | Canola | nucleus | 27.47 | 30.4 |
| VIT_18s0001g09920.t01 | Wine grape | nucleus | 31.04 | 30.38 |
| CDY30607 | Canola | nucleus | 29.4 | 30.31 |
| Bra036051.1-P | Field mustard | nucleus | 29.4 | 30.31 |
| VIT_03s0180g00040.t01 | Wine grape | nucleus | 32.14 | 30.31 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 14.29 | 30.23 |
| KRH77050 | Soybean | nucleus, plastid | 27.47 | 29.94 |
| CDY57741 | Canola | nucleus | 29.95 | 29.86 |
| CDX76265 | Canola | nucleus | 29.95 | 29.86 |
| CDY17742 | Canola | nucleus | 28.85 | 29.58 |
| KRH61348 | Soybean | nucleus | 28.3 | 29.51 |
| Solyc02g064900.1.1 | Tomato | nucleus | 28.02 | 29.48 |
| KRH04529 | Soybean | nucleus | 29.95 | 29.38 |
| Solyc02g064860.1.1 | Tomato | nucleus | 18.96 | 29.36 |
| Solyc02g064910.1.1 | Tomato | nucleus | 18.96 | 29.36 |
| Solyc02g092980.2.1 | Tomato | nucleus | 28.85 | 29.25 |
| PGSC0003DMT400031329 | Potato | nucleus | 25.82 | 29.19 |
| Solyc04g078470.2.1 | Tomato | nucleus | 26.92 | 29.17 |
| AT3G50070.1 | Thale cress | nucleus | 28.85 | 29.09 |
| KRH52038 | Soybean | nucleus | 28.85 | 29.01 |
| KRH57973 | Soybean | nucleus | 30.49 | 28.98 |
| CDX72453 | Canola | nucleus | 28.57 | 28.89 |
| Bra034612.1-P | Field mustard | nucleus | 29.12 | 28.8 |
| CDY49278 | Canola | nucleus | 29.12 | 28.73 |
| Bra011501.1-P | Field mustard | nucleus | 29.4 | 28.69 |
| CDX75405 | Canola | nucleus | 29.4 | 28.69 |
| CDY69708 | Canola | nucleus | 29.4 | 28.61 |
| Bra017629.1-P | Field mustard | nucleus | 28.85 | 28.53 |
| Bra012146.1-P | Field mustard | nucleus | 27.75 | 28.53 |
| CDY01425 | Canola | nucleus | 27.75 | 28.53 |
| KRG90996 | Soybean | nucleus | 30.77 | 28.5 |
| AT4G34160.1 | Thale cress | nucleus | 29.4 | 28.46 |
| PGSC0003DMT400064307 | Potato | nucleus | 28.3 | 28.37 |
| CDY12825 | Canola | nucleus | 27.75 | 28.21 |
| Os03t0392000-00 | Rice | cytosol, nucleus, plastid | 18.68 | 27.64 |
| KRH35760 | Soybean | nucleus | 30.22 | 27.36 |
| Os09t0382300-00 | Rice | nucleus | 23.08 | 27.27 |
| Os09t0466100-01 | Rice | nucleus | 26.37 | 26.97 |
| Os12t0588800-01 | Rice | nucleus | 26.37 | 26.3 |
| Os03t0203800-01 | Rice | nucleus | 24.73 | 26.09 |
| PGSC0003DMT400068627 | Potato | nucleus | 21.7 | 25.65 |
| Os03t0617500-01 | Rice | cytosol, nucleus | 26.37 | 25.53 |
| AT5G67260.2 | Thale cress | nucleus | 28.3 | 25.5 |
| VIT_00s0194g00280.t01 | Wine grape | mitochondrion | 19.78 | 25.26 |
| PGSC0003DMT400011487 | Potato | nucleus | 12.36 | 24.46 |
| Os08t0479300-01 | Rice | nucleus | 25.27 | 24.02 |
| Os11t0706801-00 | Rice | nucleus | 20.88 | 23.75 |
| Os07t0620800-01 | Rice | nucleus | 22.8 | 23.31 |
| Os07t0556000-01 | Rice | cytosol | 19.51 | 22.19 |
| Os06t0236600-00 | Rice | nucleus | 18.96 | 19.01 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:4346394 | EMBL:AK103499 | ProteinID:BAF24488.1 | ProteinID:BAT06828.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N | ProteinID:EAZ43751.1 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0051301 | EnsemblPlantsGene:Os09g0111100 | EnsemblPlants:Os09t0111100-01 | PFAM:PF00134 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF342 | UniProt:Q0J3H7 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0000DD960B | RefSeq:XP_015610990.1 |
| SEG:seg | : | : | : | : | : |
Description
CYCLIN-D3-1Cyclin D domain containing protein. (Os09t0111100-01)
Coordinates
chr9:-:969784..971670
Molecular Weight (calculated)
38344.6 Da
IEP (calculated)
4.689
GRAVY (calculated)
0.063
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFATLFDSL YCPEEHLDLF HDTAADDDLH LDLHLHQPPP PPPLLDDDLP ALFHALRGKE DPLRPAADDD GYGGVSAREA AVGWALRAVA RLGFSALTAA
101: LAVAYLDRCF LGGALRLGDR PWMARLAAVA CVALAAKVEE TRVPVLLDLQ LCAAERADPN EAYVFEDKTV RRMELLVLSA LGWRMHPVTP LSYLQPLLGT
201: AHAARLHHCD TALLALMPDW RWPRHRPSAW AAAALLATAG WCGGGGGDDA ELLALIDAPK DEMAECAKII SEEAAAAAAG GIVIGGENKR KGAAGLYSAP
301: ASPSGVIGAS ACFSCDSSSS SVDSLFAALE PPGRPIKRGA AAATTADPLP ADEESRDAWP PYAA
101: LAVAYLDRCF LGGALRLGDR PWMARLAAVA CVALAAKVEE TRVPVLLDLQ LCAAERADPN EAYVFEDKTV RRMELLVLSA LGWRMHPVTP LSYLQPLLGT
201: AHAARLHHCD TALLALMPDW RWPRHRPSAW AAAALLATAG WCGGGGGDDA ELLALIDAPK DEMAECAKII SEEAAAAAAG GIVIGGENKR KGAAGLYSAP
301: ASPSGVIGAS ACFSCDSSSS SVDSLFAALE PPGRPIKRGA AAATTADPLP ADEESRDAWP PYAA
001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
Arabidopsis Description
CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.