Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os02t0123100-01 | |
Os03t0146300-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G37630.1 | Os03t0146300-01 | AT2G27960.1 | 20706207 |
AT4G37630.1 | Os03t0146300-01 | AT2G27970.1 | 20706207 |
AT4G37630.1 | Os02t0123100-01 | AT3G48750.1 | 20706207 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4B01G257900.1 | Wheat | cytosol | 62.9 | 65.76 |
TraesCS4D01G257800.1 | Wheat | cytosol, nucleus, plastid | 64.93 | 65.12 |
TraesCS4A01G046900.1 | Wheat | nucleus | 64.93 | 63.82 |
Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 58.84 | 57.51 |
EER92677 | Sorghum | nucleus | 57.68 | 56.06 |
Zm00001d028092_P001 | Maize | cytosol | 43.48 | 55.15 |
Zm00001d003439_P001 | Maize | plastid | 20.29 | 55.12 |
TraesCS7A01G479000.1 | Wheat | cytosol, nucleus, plastid | 17.1 | 49.17 |
GSMUA_Achr4P07110_001 | Banana | nucleus | 32.46 | 35.0 |
GSMUA_Achr6P07740_001 | Banana | nucleus | 30.72 | 33.33 |
GSMUA_Achr6P16910_001 | Banana | cytosol | 25.8 | 32.01 |
GSMUA_Achr10P... | Banana | nucleus | 25.22 | 30.42 |
Os03t0617500-01 | Rice | cytosol, nucleus | 32.75 | 30.05 |
Os12t0588800-01 | Rice | nucleus | 31.3 | 29.59 |
VIT_18s0001g09160.t01 | Wine grape | nucleus | 26.67 | 29.02 |
KRH52092 | Soybean | nucleus | 25.51 | 28.03 |
KRH77118 | Soybean | nucleus | 26.67 | 27.71 |
Os03t0392000-00 | Rice | cytosol, nucleus, plastid | 19.71 | 27.64 |
KRH28363 | Soybean | nucleus | 26.38 | 27.49 |
KRH61407 | Soybean | nucleus | 24.35 | 26.92 |
VIT_07s0129g00200.t01 | Wine grape | nucleus | 25.51 | 26.67 |
Os09t0382300-00 | Rice | nucleus | 22.61 | 25.32 |
CDY29570 | Canola | nucleus | 24.35 | 25.15 |
Os09t0111100-01 | Rice | cytosol | 26.09 | 24.73 |
Bra017840.1-P | Field mustard | nucleus | 24.35 | 24.63 |
CDX72643 | Canola | nucleus | 24.06 | 24.41 |
AT4G37630.1 | Thale cress | nucleus | 22.61 | 24.15 |
Os07t0620800-01 | Rice | nucleus | 23.19 | 22.47 |
Os08t0479300-01 | Rice | nucleus | 23.48 | 21.15 |
Os09t0466100-01 | Rice | nucleus | 21.45 | 20.79 |
Os06t0236600-00 | Rice | nucleus | 20.87 | 19.83 |
Os07t0556000-01 | Rice | cytosol | 16.52 | 17.81 |
Os11t0706801-00 | Rice | nucleus | 16.23 | 17.5 |
Protein Annotations
Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:4331985 | ProteinID:ABF94529.1 | EMBL:AK070370 | ProteinID:BAF11222.1 |
ProteinID:BAS82843.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051301 | EnsemblPlantsGene:Os03g0203800 | EnsemblPlants:Os03t0203800-01 |
PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF273 | UniProt:Q10QA2 |
SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0000DB4C86 | RefSeq:XP_015631776.1 | SEG:seg | : |
Description
D-TYPE CYCLIN 5;3Cyclin D domain containing protein. (Os03t0203800-01)
Coordinates
chr3:-:5441845..5444188
Molecular Weight (calculated)
38062.2 Da
IEP (calculated)
4.747
GRAVY (calculated)
-0.300
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDASASTSA PATPTSTLIC REDGNDLFSA DPADDDGGGG SGGDWELSIA DDDHVLLMDR DDEYLALMLS KERCAGGGGG GERGDEEEEE MVEEWMKNAR
101: AWCVGWIVKT NAGFRFSLKT AYVAVTYLDR FLARRCVDRD KEWALQLLSV ACLSLAAKVE ERRPPRLPEF KLDMYDCASL MRMELLVLTT LKWQMITETP
201: FSYLNCFTAK FRHDERKAIV LRAIECIFAS IKVISSVGYQ PSTIALAAIL IARNKETAPN LDELKSVVGS LWQQLDTGHV YSCYNKMMIQ EDRSMQSTTE
301: VASSGVSVAH IGGSEDSAMG GANNATTLEA TPDKKRKRLH SPQRQ
101: AWCVGWIVKT NAGFRFSLKT AYVAVTYLDR FLARRCVDRD KEWALQLLSV ACLSLAAKVE ERRPPRLPEF KLDMYDCASL MRMELLVLTT LKWQMITETP
201: FSYLNCFTAK FRHDERKAIV LRAIECIFAS IKVISSVGYQ PSTIALAAIL IARNKETAPN LDELKSVVGS LWQQLDTGHV YSCYNKMMIQ EDRSMQSTTE
301: VASSGVSVAH IGGSEDSAMG GANNATTLEA TPDKKRKRLH SPQRQ
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.