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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G257900.1 Wheat cytosol 62.9 65.76
TraesCS4D01G257800.1 Wheat cytosol, nucleus, plastid 64.93 65.12
TraesCS4A01G046900.1 Wheat nucleus 64.93 63.82
Zm00001d048143_P003 Maize nucleus, peroxisome, plastid 58.84 57.51
EER92677 Sorghum nucleus 57.68 56.06
Zm00001d028092_P001 Maize cytosol 43.48 55.15
Zm00001d003439_P001 Maize plastid 20.29 55.12
TraesCS7A01G479000.1 Wheat cytosol, nucleus, plastid 17.1 49.17
GSMUA_Achr4P07110_001 Banana nucleus 32.46 35.0
GSMUA_Achr6P07740_001 Banana nucleus 30.72 33.33
GSMUA_Achr6P16910_001 Banana cytosol 25.8 32.01
GSMUA_Achr10P... Banana nucleus 25.22 30.42
Os03t0617500-01 Rice cytosol, nucleus 32.75 30.05
Os12t0588800-01 Rice nucleus 31.3 29.59
VIT_18s0001g09160.t01 Wine grape nucleus 26.67 29.02
KRH52092 Soybean nucleus 25.51 28.03
KRH77118 Soybean nucleus 26.67 27.71
Os03t0392000-00 Rice cytosol, nucleus, plastid 19.71 27.64
KRH28363 Soybean nucleus 26.38 27.49
KRH61407 Soybean nucleus 24.35 26.92
VIT_07s0129g00200.t01 Wine grape nucleus 25.51 26.67
Os09t0382300-00 Rice nucleus 22.61 25.32
CDY29570 Canola nucleus 24.35 25.15
Os09t0111100-01 Rice cytosol 26.09 24.73
Bra017840.1-P Field mustard nucleus 24.35 24.63
CDX72643 Canola nucleus 24.06 24.41
AT4G37630.1 Thale cress nucleus 22.61 24.15
Os07t0620800-01 Rice nucleus 23.19 22.47
Os08t0479300-01 Rice nucleus 23.48 21.15
Os09t0466100-01 Rice nucleus 21.45 20.79
Os06t0236600-00 Rice nucleus 20.87 19.83
Os07t0556000-01 Rice cytosol 16.52 17.81
Os11t0706801-00 Rice nucleus 16.23 17.5
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.4EntrezGene:4331985ProteinID:ABF94529.1EMBL:AK070370ProteinID:BAF11222.1
ProteinID:BAS82843.1InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0007049GO:GO:0008150GO:GO:0009987GO:GO:0051301EnsemblPlantsGene:Os03g0203800EnsemblPlants:Os03t0203800-01
PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771PANTHER:PTHR10177PANTHER:PTHR10177:SF273UniProt:Q10QA2
SMART:SM00385SUPFAM:SSF47954UniParc:UPI0000DB4C86RefSeq:XP_015631776.1SEG:seg:
Description
D-TYPE CYCLIN 5;3Cyclin D domain containing protein. (Os03t0203800-01)
Coordinates
chr3:-:5441845..5444188
Molecular Weight (calculated)
38062.2 Da
IEP (calculated)
4.747
GRAVY (calculated)
-0.300
Length
345 amino acids
Sequence
(BLAST)
001: MGDASASTSA PATPTSTLIC REDGNDLFSA DPADDDGGGG SGGDWELSIA DDDHVLLMDR DDEYLALMLS KERCAGGGGG GERGDEEEEE MVEEWMKNAR
101: AWCVGWIVKT NAGFRFSLKT AYVAVTYLDR FLARRCVDRD KEWALQLLSV ACLSLAAKVE ERRPPRLPEF KLDMYDCASL MRMELLVLTT LKWQMITETP
201: FSYLNCFTAK FRHDERKAIV LRAIECIFAS IKVISSVGYQ PSTIALAAIL IARNKETAPN LDELKSVVGS LWQQLDTGHV YSCYNKMMIQ EDRSMQSTTE
301: VASSGVSVAH IGGSEDSAMG GANNATTLEA TPDKKRKRLH SPQRQ
Best Arabidopsis Sequence Match ( AT4G37630.1 )
(BLAST)
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.