Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr2P11710_001 | |
| GSMUA_Achr2P11750_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P16910_001 | Banana | cytosol | 39.86 | 41.01 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 44.06 | 39.62 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 40.21 | 36.28 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 40.21 | 34.85 |
| KRH61407 | Soybean | nucleus | 37.76 | 34.62 |
| KRH52092 | Soybean | nucleus | 37.41 | 34.08 |
| KRH28363 | Soybean | nucleus | 38.11 | 32.93 |
| KRH77118 | Soybean | nucleus | 37.41 | 32.23 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 39.16 | 32.09 |
| TraesCS5A01G068600.1 | Wheat | nucleus | 39.16 | 31.91 |
| TraesCS5B01G075000.1 | Wheat | nucleus | 39.16 | 31.82 |
| TraesCS5D01G080600.1 | Wheat | nucleus | 39.16 | 31.82 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 34.97 | 31.25 |
| Zm00001d030894_P002 | Maize | nucleus | 36.71 | 30.43 |
| Zm00001d041345_P001 | Maize | cytosol | 37.06 | 30.37 |
| EES17294 | Sorghum | nucleus | 38.46 | 30.3 |
| Os12t0588800-01 | Rice | nucleus | 38.11 | 29.86 |
| AT4G37630.1 | Thale cress | nucleus | 32.17 | 28.48 |
| CDY29570 | Canola | nucleus | 33.22 | 28.44 |
| CDX72643 | Canola | nucleus | 33.57 | 28.24 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 33.22 | 28.19 |
| Bra017840.1-P | Field mustard | nucleus | 33.57 | 28.15 |
| TraesCS4B01G080500.1 | Wheat | nucleus | 32.52 | 27.68 |
| TraesCS4A01G234600.1 | Wheat | cytosol | 32.52 | 27.6 |
| TraesCS4B01G257900.1 | Wheat | cytosol | 31.47 | 27.27 |
| Zm00001d033330_P001 | Maize | nucleus | 33.57 | 27.12 |
| TraesCS4A01G046900.1 | Wheat | nucleus | 32.87 | 26.78 |
| Os03t0617500-01 | Rice | cytosol, nucleus | 34.97 | 26.6 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 23.08 | 26.51 |
| EER91226 | Sorghum | nucleus | 34.27 | 26.49 |
| TraesCS4D01G257800.1 | Wheat | cytosol, nucleus, plastid | 31.82 | 26.45 |
| EER92677 | Sorghum | nucleus | 32.17 | 25.92 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 27.27 | 25.74 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 22.38 | 25.5 |
| Zm00001d013728_P001 | Maize | cytosol | 32.52 | 25.48 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 26.22 | 25.34 |
| GSMUA_Achr10P... | Banana | nucleus | 28.32 | 25.23 |
| Os03t0203800-01 | Rice | nucleus | 30.42 | 25.22 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 21.33 | 25.21 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 30.77 | 25.14 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 30.77 | 24.93 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 30.42 | 24.65 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 31.12 | 24.52 |
| GSMUA_Achr10P... | Banana | nucleus | 30.07 | 24.23 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 29.37 | 24.21 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 29.72 | 23.88 |
| HORVU4Hr1G013700.2 | Barley | plastid | 32.52 | 23.54 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 28.32 | 23.21 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 29.02 | 23.18 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 27.97 | 23.12 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 27.97 | 23.05 |
| GSMUA_Achr10P... | Banana | nucleus | 27.62 | 22.97 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 22.03 | 22.91 |
| GSMUA_Achr7P26100_001 | Banana | nucleus | 29.02 | 22.62 |
| GSMUA_Achr10P... | Banana | cytosol | 19.93 | 22.53 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 28.32 | 22.44 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 23.43 | 22.04 |
| GSMUA_Achr1P22570_001 | Banana | nucleus | 28.32 | 21.26 |
| Zm00001d028092_P001 | Maize | cytosol | 19.58 | 20.59 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 20.28 | 19.33 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 26.22 | 19.33 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 25.87 | 19.02 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.98 | 18.93 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 22.38 | 18.55 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 25.17 | 17.69 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 22.38 | 17.68 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 24.13 | 16.95 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 23.78 | 16.11 |
| TraesCS7A01G479000.1 | Wheat | cytosol, nucleus, plastid | 3.15 | 7.5 |
| Zm00001d003439_P001 | Maize | plastid | 2.8 | 6.3 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P28520_001 | EnsemblPlants:GSMUA_Achr10T28520_001 | EnsemblPlantsGene:GSMUA_Achr10G28520_001 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_N | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF255 | PFAM:PF00134 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI00029628E4 | UniProt:M0RM76 | MapMan:13.1.1.1.4 |
Description
Putative Cyclin-D5-3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G28520_001]
Coordinates
chr10:+:31316020..31317250
Molecular Weight (calculated)
32621.2 Da
IEP (calculated)
4.275
GRAVY (calculated)
-0.231
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEPGCSLSI SSLLCQEDAT DLDPDLDLDL EFEDELCQAY LLLKDAIFTD EEYIQELASR ERSSFERQDR EFSSCDECLV PADNWFKRAR SDAIRWILNT
101: TARFGFGFQT AYLAVAYLDR FLRRRRIDNG KPWATGLLST ACLSVAAKME ERRVPPLSEM QIEGYAFDSN AVQRMELLLL DTLQWRTNCV TPFDYLSYFR
201: SKFQCEESLH KAIDFIFAAI DAINLTACRS SAVAAAAILA ASSEIYSKEL LETKMSTTSL FQSFSEKYHD SGSAQEHDNT QEVVFF
101: TARFGFGFQT AYLAVAYLDR FLRRRRIDNG KPWATGLLST ACLSVAAKME ERRVPPLSEM QIEGYAFDSN AVQRMELLLL DTLQWRTNCV TPFDYLSYFR
201: SKFQCEESLH KAIDFIFAAI DAINLTACRS SAVAAAAILA ASSEIYSKEL LETKMSTTSL FQSFSEKYHD SGSAQEHDNT QEVVFF
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG KDETWAMRLL SVACLSLAAK MEERIVPGLS QYPQDHDFVF KPDVIRKTEL LILSTLDWKM NLITPFHYFN YFLAKISQDN HSVSKDLVLL
201: RSSDSLLALT KEISFTEYRQ FVVAAVTTLL ASSSTSSDIR LTREEIANKF GSISWWTSNE NV
101: DLFLHKRFIG KDETWAMRLL SVACLSLAAK MEERIVPGLS QYPQDHDFVF KPDVIRKTEL LILSTLDWKM NLITPFHYFN YFLAKISQDN HSVSKDLVLL
201: RSSDSLLALT KEISFTEYRQ FVVAAVTTLL ASSSTSSDIR LTREEIANKF GSISWWTSNE NV
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.