Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018036.1-P | |
| Bra029917.1-P | |
| Bra034380.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G37630.1 | Bra034380.1-P | AT2G27970.1 | 20706207 |
| AT4G37630.1 | Bra018036.1-P | AT3G48750.1 | 20706207 |
| AT4G37630.1 | Bra029917.1-P | AT3G48750.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29570 | Canola | nucleus | 97.36 | 99.4 |
| AT4G37630.1 | Thale cress | nucleus | 79.47 | 83.9 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 35.78 | 36.97 |
| KRH77118 | Soybean | nucleus | 34.6 | 35.54 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 32.84 | 35.22 |
| KRH28363 | Soybean | nucleus | 34.02 | 35.05 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 28.45 | 34.89 |
| GSMUA_Achr10P... | Banana | nucleus | 28.15 | 33.57 |
| TraesCS5A01G068600.1 | Wheat | nucleus | 27.86 | 27.07 |
| TraesCS5D01G080600.1 | Wheat | nucleus | 27.86 | 26.99 |
| TraesCS5B01G075000.1 | Wheat | nucleus | 27.86 | 26.99 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 27.57 | 26.93 |
| TraesCS4B01G080500.1 | Wheat | nucleus | 26.39 | 26.79 |
| Os12t0588800-01 | Rice | nucleus | 28.45 | 26.58 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 26.1 | 26.41 |
| TraesCS4A01G234600.1 | Wheat | cytosol | 26.1 | 26.41 |
| TraesCS4B01G257900.1 | Wheat | cytosol | 25.51 | 26.36 |
| TraesCS4D01G257800.1 | Wheat | cytosol, nucleus, plastid | 26.1 | 25.87 |
| Zm00001d030894_P002 | Maize | nucleus | 26.1 | 25.8 |
| Zm00001d041345_P001 | Maize | cytosol | 26.39 | 25.79 |
| TraesCS4A01G046900.1 | Wheat | nucleus | 26.39 | 25.64 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 24.05 | 25.62 |
| EES17294 | Sorghum | nucleus | 27.27 | 25.62 |
| Bra037817.1-P | Field mustard | nucleus | 20.53 | 24.82 |
| Bra034612.1-P | Field mustard | nucleus | 26.39 | 24.46 |
| Os03t0203800-01 | Rice | nucleus | 24.63 | 24.35 |
| Bra024383.1-P | Field mustard | nucleus | 21.7 | 24.03 |
| Zm00001d033330_P001 | Maize | nucleus | 24.93 | 24.01 |
| Os03t0617500-01 | Rice | cytosol, nucleus | 26.39 | 23.94 |
| Bra007901.1-P | Field mustard | nucleus | 23.75 | 23.89 |
| Bra029992.1-P | Field mustard | nucleus | 24.63 | 23.86 |
| Bra011501.1-P | Field mustard | nucleus | 26.1 | 23.86 |
| EER91226 | Sorghum | nucleus | 25.81 | 23.78 |
| Bra030232.1-P | Field mustard | nucleus | 24.63 | 23.66 |
| Bra038518.1-P | Field mustard | nucleus | 19.94 | 23.45 |
| EER92677 | Sorghum | nucleus | 24.34 | 23.38 |
| Bra017629.1-P | Field mustard | nucleus | 25.22 | 23.37 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 23.75 | 22.95 |
| Bra036051.1-P | Field mustard | nucleus | 23.75 | 22.95 |
| Bra012909.1-P | Field mustard | nucleus | 21.7 | 22.56 |
| HORVU4Hr1G013700.2 | Barley | plastid | 26.1 | 22.53 |
| Zm00001d013728_P001 | Maize | cytosol | 24.05 | 22.47 |
| Bra009031.1-P | Field mustard | nucleus | 19.35 | 22.22 |
| Bra031858.1-P | Field mustard | nucleus | 18.77 | 21.4 |
| Bra012146.1-P | Field mustard | nucleus | 21.41 | 20.62 |
| Zm00001d028092_P001 | Maize | cytosol | 16.42 | 20.59 |
| Bra034198.1-P | Field mustard | nucleus | 16.13 | 18.46 |
| Bra009612.1-P | Field mustard | cytosol | 16.42 | 16.47 |
| Bra005708.1-P | Field mustard | cytosol | 15.25 | 15.16 |
| TraesCS7A01G479000.1 | Wheat | cytosol, nucleus, plastid | 4.99 | 14.17 |
| Zm00001d003439_P001 | Maize | plastid | 4.69 | 12.6 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EnsemblPlantsGene:Bra017840 | EnsemblPlants:Bra017840.1 | EnsemblPlants:Bra017840.1-P | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042023 | UniProt:M4DMV3 | PFAM:PF00134 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF255 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0002540D53 | SEG:seg | : |
Description
AT4G37630 (E=5e-107) CYCD5;1 | CYCD5;1 (cyclin d5;1); cyclin-dependent protein kinase
Coordinates
chrA03:+:30868401..30869792
Molecular Weight (calculated)
38940.8 Da
IEP (calculated)
4.770
GRAVY (calculated)
-0.522
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEPRDSLAL SNLLICHESE SCLNEQQQDD DDDDETKIER SDEQRKPHCF ATIGDDDEDY VAELARKENR RFDDDDDKPT KTTSSLDRLI AIDWILTTRT
101: RFGFQHQTAY IAISYLDLFL QKRFIGLQKD ESWAIRLLSV ASLSLAAKME ERVVPGLSQY PQDQDFVFKP DVIRKTELLI LSTLDWKMSL ITPFHYLNYF
201: LAKISPDRNQ SVSKELVLLR SSESLLALTK EISVTDYRQF VVAAATTLLA SSTSSDIRLT REEMGNKFGS VSWWTSNEND NVYSCYQRML EIEERKHMTP
301: PELAVPGPVV GSGSGAKRRL SFVDSDQPSS SSPDAKRMRR L
101: RFGFQHQTAY IAISYLDLFL QKRFIGLQKD ESWAIRLLSV ASLSLAAKME ERVVPGLSQY PQDQDFVFKP DVIRKTELLI LSTLDWKMSL ITPFHYLNYF
201: LAKISPDRNQ SVSKELVLLR SSESLLALTK EISVTDYRQF VVAAATTLLA SSTSSDIRLT REEMGNKFGS VSWWTSNEND NVYSCYQRML EIEERKHMTP
301: PELAVPGPVV GSGSGAKRRL SFVDSDQPSS SSPDAKRMRR L
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.