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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003426.1-P
Bra005875.1-P
Bra005877.1-P
Bra007555.1-P
Bra008278.1-P
Bra013108.1-P
Bra013838.1-P
Bra014473.1-P
Bra018036.1-P
Bra018983.1-P
Bra025573.1-P
Bra027579.1-P
Bra029917.1-P
Bra030366.1-P
Bra030844.1-P
Bra034380.1-P
Bra038015.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G50070.1 Bra018983.1-P AT1G52730.1 20706207
AT3G50070.1 Bra030366.1-P AT1G52730.1 20706207
AT3G50070.1 Bra038015.1-P AT1G55820.1 20706207
AT3G50070.1 Bra034380.1-P AT2G27970.1 20706207
AT3G50070.1 Bra018036.1-P AT3G48750.1 20706207
AT3G50070.1 Bra029917.1-P AT3G48750.1 20706207
AT3G50070.1 Bra003426.1-P AT3G60750.1 20706207
AT3G50070.1 Bra007555.1-P AT3G60750.1 20706207
AT3G50070.1 Bra014473.1-P AT3G60750.1 20706207
AT3G50070.1 Bra013108.1-P AT4G09320.1 20706207
AT3G50070.1 Bra027579.1-P AT4G09320.1 20706207
AT3G50070.1 Bra030844.1-P AT4G09320.1 20706207
AT3G50070.1 Bra013838.1-P AT4G24820.1 20706207
AT3G50070.1 Bra005875.1-P AT5G06110.1 20706207
AT3G50070.1 Bra005877.1-P AT5G06110.1 20706207
AT3G50070.1 Bra008278.1-P AT5G06110.1 20706207
AT3G50070.1 Bra025573.1-P AT5G40460.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX83112 Canola nucleus 100.0 100.0
Bra012909.1-P Field mustard nucleus 79.55 85.37
AT3G50070.1 Thale cress nucleus 82.1 80.06
Bra036051.1-P Field mustard nucleus 79.55 79.32
Bra012146.1-P Field mustard nucleus 66.76 66.38
KRH04529 Soybean nucleus 51.7 49.06
Solyc02g092980.2.1 Tomato nucleus 49.72 48.75
PGSC0003DMT400064307 Potato nucleus 48.86 47.38
KRH57973 Soybean nucleus 51.42 47.26
PGSC0003DMT400031329 Potato nucleus 42.61 46.58
KRH77050 Soybean nucleus, plastid 43.47 45.81
KRH28424 Soybean nucleus 42.9 45.07
PGSC0003DMT400068629 Potato cytosol 29.55 43.33
Bra017629.1-P Field mustard nucleus 44.6 42.66
Bra011501.1-P Field mustard nucleus 45.17 42.63
Solyc02g064860.1.1 Tomato nucleus 28.41 42.55
Solyc02g064900.1.1 Tomato nucleus 41.48 42.2
Solyc02g064910.1.1 Tomato nucleus 27.84 41.7
Bra034612.1-P Field mustard nucleus 42.9 41.03
PGSC0003DMT400068627 Potato nucleus 35.23 40.26
PGSC0003DMT400011487 Potato nucleus 20.17 38.59
Bra038518.1-P Field mustard nucleus 28.41 34.48
Bra007901.1-P Field mustard nucleus 30.4 31.56
Bra037817.1-P Field mustard nucleus 24.72 30.85
TraesCS5B01G158400.1 Wheat cytosol 30.97 30.79
HORVU5Hr1G050270.8 Barley cytosol 30.68 30.77
Os09t0111100-01 Rice cytosol 31.53 30.49
GSMUA_Achr4P20220_001 Banana nucleus 31.25 30.39
TraesCS5D01G165900.1 Wheat cytosol 30.4 30.23
TraesCS5A01G161000.1 Wheat cytosol 30.4 30.23
GSMUA_AchrUn_... Banana cytosol 26.7 29.65
Bra031858.1-P Field mustard nucleus 25.0 29.43
GSMUA_Achr1P09780_001 Banana cytosol 32.39 29.38
Bra030232.1-P Field mustard nucleus 29.26 29.01
GSMUA_Achr2P05260_001 Banana nucleus 28.41 28.99
Bra024383.1-P Field mustard nucleus 25.28 28.9
Bra009031.1-P Field mustard nucleus 24.15 28.62
GSMUA_Achr3P13140_001 Banana nucleus 32.95 28.5
GSMUA_Achr3P01010_001 Banana nucleus 32.95 28.5
Zm00001d019696_P001 Maize cytosol 30.4 27.65
EER96424 Sorghum cytosol 29.26 26.96
Zm00001d005293_P001 Maize cytosol 29.55 26.6
Bra017840.1-P Field mustard nucleus 23.86 24.63
Bra034198.1-P Field mustard nucleus 19.6 23.15
Bra005708.1-P Field mustard cytosol 21.02 21.57
Bra009612.1-P Field mustard cytosol 20.45 21.18
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.4EnsemblPlantsGene:Bra029992EnsemblPlants:Bra029992.1EnsemblPlants:Bra029992.1-PInterPro:Cyclin-like
InterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634UniProt:M4EMH2PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771ScanProsite:PS00292
PANTHER:PTHR10177PANTHER:PTHR10177:SF216SMART:SM00385SMART:SM01332SUPFAM:SSF47954UniParc:UPI000254450F
SEG:seg:::::
Description
AT3G50070 (E=4e-151) CYCD3;3 | CYCD3;3 (CYCLIN D3;3); cyclin-dependent protein kinase
Coordinates
chrA01:-:15548416..15549728
Molecular Weight (calculated)
40445.4 Da
IEP (calculated)
4.819
GRAVY (calculated)
-0.137
Length
352 amino acids
Sequence
(BLAST)
001: MALEEEGEVQ NAPFCMLFCE EERSHELEGD ESVVKFPFFH LGFLDHDMLW DDDELSSLIS KENELRPCLS DTVLDEFLVL CREKALDWIF RVKTYYGFNA
101: LTALLAVNYF DRFLTSRKFQ TDKPWMSQLT AVACLSLAAK VEEIRVPLLL DLQVGDARYV FEAKTIQRME LLILSTLQWR MHPVTPISYF DHIFRRCSSK
201: SHHDLEFLSR CESLLLSIVP DSRFLSYSPS VLATAIMVSV VGDFTTCDEA EYESQLMTLL KVDPEKVNKC YELVLDHIPS KKRMQPASPT GVFDASFNSD
301: SSNESWVASA SASMSASQSH EPLFKRRRVQ EQQMKLSSIN RMFLDVFTSS PR
Best Arabidopsis Sequence Match ( AT3G50070.1 )
(BLAST)
001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
Arabidopsis Description
CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.