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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra017840.1-P
Bra018036.1-P
Bra024815.1-P
Bra026586.1-P
Bra029917.1-P
Bra034380.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G40460.1 Bra024815.1-P AT2G02560.1 20706207
AT5G40460.1 Bra026586.1-P AT2G02560.1 20706207
AT5G40460.1 Bra034380.1-P AT2G27970.1 20706207
AT5G40460.1 Bra018036.1-P AT3G48750.1 20706207
AT5G40460.1 Bra029917.1-P AT3G48750.1 20706207
AT5G40460.1 Bra017840.1-P AT4G37630.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY42582 Canola cytosol 100.0 100.0
AT5G40460.1 Thale cress nucleus 83.02 78.57
Bra039074.1-P Field mustard cytosol 70.75 71.43
Bra025292.1-P Field mustard nucleus 67.92 62.07
VIT_14s0066g00600.t01 Wine grape nucleus 58.49 60.19
KRG93247 Soybean nucleus 57.55 56.48
KRH56563 Soybean nucleus 55.66 53.64
Solyc02g086450.1.1 Tomato cytosol 50.94 51.43
Solyc02g067810.1.1 Tomato nucleus 50.0 50.96
PGSC0003DMT400017807 Potato cytosol 49.06 50.0
PGSC0003DMT400032809 Potato nucleus 50.94 48.65
Bra019906.1-P Field mustard cytosol, nucleus, plastid 48.11 46.36
Bra027129.1-P Field mustard cytosol 38.68 37.27
Protein Annotations
EnsemblPlants:Bra025573.1EnsemblPlants:Bra025573.1-PEnsemblPlantsGene:Bra025573PANTHER:PTHR33142PANTHER:PTHR33142:SF2SEG:seg
UniParc:UPI0002544ECEUniProt:M4E9W7MapMan:13.1.1.3.2:::
Description
AT5G40460 (E=9e-025) | unknown protein
Coordinates
chrA04:+:7768657..7768977
Molecular Weight (calculated)
11926.4 Da
IEP (calculated)
10.078
GRAVY (calculated)
-0.761
Length
106 amino acids
Sequence
(BLAST)
001: MGFSKKSQLD GGLDFDGKKW VIAGIGIRAS LKPVKTKLRA PETEAEVEEE EECSTTPTAK EAKIPEKLKC PPAPRKRRPA LKCRSNAVRE FFTPPDDLET
101: VFIRRR
Best Arabidopsis Sequence Match ( AT5G40460.1 )
(BLAST)
001: MGFSKKSQFE GGLESDGKKW VIAGISIRAS LKPVKTKLRA PPEIVTEVEE DCYNEEEECS TTPTAKETKI PELLECPPAP RKRRPALKCR SNVVREFFTP
101: PSDLETVFLR RR
Arabidopsis Description
SMR6Cyclin-dependent protein kinase inhibitor SMR6 [Source:UniProtKB/Swiss-Prot;Acc:Q29Q81]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.