Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g103010.2.1 | |
| Solyc08g066330.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G40460.1 | Solyc01g103010.2.1 | AT2G02560.1 | 20706207 |
| AT5G40460.1 | Solyc08g066330.1.1 | AT3G48750.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032809 | Potato | nucleus | 86.67 | 81.98 |
| Solyc02g067810.1.1 | Tomato | nucleus | 65.71 | 66.35 |
| VIT_14s0066g00600.t01 | Wine grape | nucleus | 57.14 | 58.25 |
| KRG93247 | Soybean | nucleus | 57.14 | 55.56 |
| KRH56563 | Soybean | nucleus | 55.24 | 52.73 |
| Bra025573.1-P | Field mustard | cytosol | 51.43 | 50.94 |
| CDY42582 | Canola | cytosol | 51.43 | 50.94 |
| CDY50122 | Canola | nucleus | 50.48 | 50.0 |
| AT5G40460.1 | Thale cress | nucleus | 49.52 | 46.43 |
| Bra039074.1-P | Field mustard | cytosol | 41.9 | 41.9 |
| CDY20043 | Canola | cytosol | 41.9 | 41.9 |
| CDY00151 | Canola | nucleus | 43.81 | 41.44 |
| CDX83722 | Canola | nucleus | 41.9 | 38.94 |
| AT3G27630.1 | Thale cress | cytosol | 35.24 | 37.37 |
| Bra025292.1-P | Field mustard | nucleus | 40.0 | 36.21 |
| CDX83719 | Canola | cytosol | 26.67 | 28.87 |
Protein Annotations
| EnsemblPlants:Solyc02g086450.1.1 | EnsemblPlantsGene:Solyc02g086450.1 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF2 | SEG:seg | UniParc:UPI000276797A |
| UniProt:K4BBF3 | MapMan:13.1.1.3.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:49117806..49118123
Molecular Weight (calculated)
11832.1 Da
IEP (calculated)
9.298
GRAVY (calculated)
-0.893
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFSKKHQLV DGSKEENKMW VIAGIAFRPN KLKSISTKPN RGGEEEAEEE EGSKTPTTRD SRIPEKLPCP PAPAKRRPVS TCHYNGAREF FNPPDLESVF
101: IIRHV
101: IIRHV
001: MGFSKKSQFE GGLESDGKKW VIAGISIRAS LKPVKTKLRA PPEIVTEVEE DCYNEEEECS TTPTAKETKI PELLECPPAP RKRRPALKCR SNVVREFFTP
101: PSDLETVFLR RR
101: PSDLETVFLR RR
Arabidopsis Description
SMR6Cyclin-dependent protein kinase inhibitor SMR6 [Source:UniProtKB/Swiss-Prot;Acc:Q29Q81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.