Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001218 | |
| PGSC0003DMT400048460 | |
| PGSC0003DMT400077428 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g086450.1.1 | Tomato | cytosol | 81.98 | 86.67 |
| PGSC0003DMT400017807 | Potato | cytosol | 68.47 | 73.08 |
| VIT_14s0066g00600.t01 | Wine grape | nucleus | 59.46 | 64.08 |
| KRG93247 | Soybean | nucleus | 53.15 | 54.63 |
| KRH56563 | Soybean | nucleus | 54.05 | 54.55 |
| Bra025573.1-P | Field mustard | cytosol | 48.65 | 50.94 |
| CDY42582 | Canola | cytosol | 48.65 | 50.94 |
| CDY50122 | Canola | nucleus | 47.75 | 50.0 |
| AT5G40460.1 | Thale cress | nucleus | 46.85 | 46.43 |
| CDY20043 | Canola | cytosol | 41.44 | 43.81 |
| Bra039074.1-P | Field mustard | cytosol | 41.44 | 43.81 |
| CDY00151 | Canola | nucleus | 42.34 | 42.34 |
| PGSC0003DMT400047922 | Potato | nucleus | 42.34 | 40.17 |
| CDX83722 | Canola | nucleus | 40.54 | 39.82 |
| AT3G27630.1 | Thale cress | cytosol | 35.14 | 39.39 |
| Bra025292.1-P | Field mustard | nucleus | 38.74 | 37.07 |
| CDX83719 | Canola | cytosol | 24.32 | 27.84 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400032809 | EnsemblPlantsGene:PGSC0003DMG400012600 | EntrezGene:102578686 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF2 | PGSC:PGSC0003DMG400012600 |
| RefSeq:XP_006338614.1 | SEG:seg | UniParc:UPI000295E5CB | UniProt:M1AY35 | MapMan:13.1.1.3.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012600]
Coordinates
chr2:+:47396165..47396744
Molecular Weight (calculated)
12715.0 Da
IEP (calculated)
8.738
GRAVY (calculated)
-1.007
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFSKKHQLV DGSKEENKMW VIAGIAFRPN KLKSISTKPN RGEEESEDEV EKSSTTPTTR DSRIPEKLPC PPAPSKRRPV STCHYNGARE FFNPPDLESV
101: FIIRHVEREN Y
101: FIIRHVEREN Y
001: MGFSKKSQFE GGLESDGKKW VIAGISIRAS LKPVKTKLRA PPEIVTEVEE DCYNEEEECS TTPTAKETKI PELLECPPAP RKRRPALKCR SNVVREFFTP
101: PSDLETVFLR RR
101: PSDLETVFLR RR
Arabidopsis Description
SMR6Cyclin-dependent protein kinase inhibitor SMR6 [Source:UniProtKB/Swiss-Prot;Acc:Q29Q81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.