Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83722 | Canola | nucleus | 85.34 | 87.61 |
| Bra039074.1-P | Field mustard | cytosol | 73.28 | 80.95 |
| Bra025573.1-P | Field mustard | cytosol | 62.07 | 67.92 |
| CDX83719 | Canola | cytosol | 55.17 | 65.98 |
| AT3G27630.1 | Thale cress | cytosol | 55.17 | 64.65 |
| VIT_14s0066g00600.t01 | Wine grape | nucleus | 40.52 | 45.63 |
| KRG93247 | Soybean | nucleus | 39.66 | 42.59 |
| Solyc02g067810.1.1 | Tomato | nucleus | 37.07 | 41.35 |
| KRH56563 | Soybean | nucleus | 38.79 | 40.91 |
| PGSC0003DMT400017807 | Potato | cytosol | 36.21 | 40.38 |
| Solyc02g086450.1.1 | Tomato | cytosol | 36.21 | 40.0 |
| PGSC0003DMT400032809 | Potato | nucleus | 37.07 | 38.74 |
| Bra019906.1-P | Field mustard | cytosol, nucleus, plastid | 36.21 | 38.18 |
| Bra027129.1-P | Field mustard | cytosol | 28.45 | 30.0 |
Protein Annotations
Description
AT5G40460 (E=1e-031) | unknown protein
Coordinates
chrA06:-:22354604..22354954
Molecular Weight (calculated)
13107.6 Da
IEP (calculated)
9.800
GRAVY (calculated)
-0.824
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSKKSQVG RGLDTDGSKW VIAEISIRAS LKPVKTKQKR HERDTEAEDE HYSGSEEYCI TPTAKEAKLS EKLICPPAPR KRRPELKCRS NVGIEYFVVT
101: PSELETVFIR SSNVKR
101: PSELETVFIR SSNVKR
001: MGFSKKSQFE GGLESDGKKW VIAGISIRAS LKPVKTKLRA PPEIVTEVEE DCYNEEEECS TTPTAKETKI PELLECPPAP RKRRPALKCR SNVVREFFTP
101: PSDLETVFLR RR
101: PSDLETVFLR RR
Arabidopsis Description
SMR6Cyclin-dependent protein kinase inhibitor SMR6 [Source:UniProtKB/Swiss-Prot;Acc:Q29Q81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.