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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002279.1-P
Bra006529.1-P
Bra006530.1-P
Bra017840.1-P
Bra018036.1-P
Bra020079.1-P
Bra029917.1-P
Bra034380.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G10690.1 Bra034380.1-P AT2G27970.1 20706207
AT1G10690.1 Bra018036.1-P AT3G48750.1 20706207
AT1G10690.1 Bra029917.1-P AT3G48750.1 20706207
AT1G10690.1 Bra017840.1-P AT4G37630.1 20706207
AT1G10690.1 Bra002279.1-P AT5G19990.1 20706207
AT1G10690.1 Bra006529.1-P AT5G19990.1 20706207
AT1G10690.1 Bra006530.1-P AT5G19990.1 20706207
AT1G10690.1 Bra020079.1-P AT5G19990.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67838 Canola cytosol, nucleus, plastid 100.0 100.0
AT1G10690.1 Thale cress nucleus 71.82 71.82
Bra027129.1-P Field mustard cytosol 50.91 50.91
Bra025573.1-P Field mustard cytosol 46.36 48.11
Bra039074.1-P Field mustard cytosol 38.18 40.0
Bra025292.1-P Field mustard nucleus 38.18 36.21
Protein Annotations
EnsemblPlants:Bra019906.1EnsemblPlants:Bra019906.1-PEnsemblPlantsGene:Bra019906PANTHER:PTHR33142PANTHER:PTHR33142:SF2SEG:seg
UniParc:UPI000253EA94UniProt:M4DTR3MapMan:13.1.1.3.2:::
Description
AT1G10690 (E=3e-031) | unknown protein
Coordinates
chrA06:-:3787968..3788300
Molecular Weight (calculated)
12128.4 Da
IEP (calculated)
8.316
GRAVY (calculated)
-0.537
Length
110 amino acids
Sequence
(BLAST)
001: MGYSDKSYNQ LEVEIREATD GKKWVIAGLP PRSPLKPINS SSDVIFTETE DQDQCPTTPT AVSVRIPRVP PCPAAPKKRK PSSKCSYVAT GREFFCPPDL
101: ETVFIQRAAS
Best Arabidopsis Sequence Match ( AT1G10690.1 )
(BLAST)
001: MGYSGKPHHQ LDGEIRESTD GKKWVIAGIP SRSPLKQINL SPGVTVTETE EQDQCPTTPT AVSVRIPRVP PCPAAPKKRK PSLKCSYVTV TRDYFSPPDL
101: ETVFIQRASY
Arabidopsis Description
SMR8Cyclin-dependent protein kinase inhibitor SMR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAD3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.