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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 3
  • nucleus 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra006526.1-P
Bra020076.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G19990.1 Bra006526.1-P AT5G19960.1 21798944
AT5G19990.1 Bra020076.1-P AT5G19960.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os06t0600301-00 Rice plasma membrane 54.75 53.54
CDX88865 Canola cytosol, extracellular 99.55 34.98
Bra020079.1-P Field mustard cytosol 99.09 30.37
Bra001297.1-P Field mustard cytosol 3.17 0.87
Bra029795.1-P Field mustard cytosol 3.17 0.87
Bra034089.1-P Field mustard cytosol 3.17 0.86
Bra003123.1-P Field mustard cytosol 3.17 0.86
Bra006978.1-P Field mustard cytosol 3.17 0.86
Bra005733.1-P Field mustard cytosol 3.17 0.63
Bra032565.1-P Field mustard mitochondrion 2.71 0.32
Bra024165.1-P Field mustard cytosol 0.45 0.31
Bra033655.1-P Field mustard cytosol 0.45 0.25
Bra035338.1-P Field mustard cytosol 0.45 0.25
Bra040214.1-P Field mustard cytosol 0.45 0.24
Bra001152.1-P Field mustard cytosol 0.45 0.24
Bra039431.1-P Field mustard cytosol 0.45 0.24
Bra007262.1-P Field mustard plastid 0.9 0.2
Bra017378.1-P Field mustard cytosol 0.45 0.17
Bra008198.1-P Field mustard cytosol 0.45 0.16
Bra022833.1-P Field mustard cytosol 0.45 0.13
Bra009342.1-P Field mustard cytosol 0.45 0.09
PGSC0003DMT400038718 Potato cytosol 0.0 0.0
KRH44668 Soybean cytosol, mitochondrion, nucleus 0.0 0.0
Os06t0600100-01 Rice plasma membrane 0.0 0.0
Os02t0205300-01 Rice cytosol 0.0 0.0
KRH46990 Soybean nucleus 0.0 0.0
Zm00001d053616_P002 Maize cytosol 0.0 0.0
Solyc05g018570.2.1 Tomato cytosol, extracellular, nucleus, plastid 0.0 0.0
Solyc05g018590.2.1 Tomato nucleus 0.0 0.0
TraesCS6A01G177600.1 Wheat cytosol 0.0 0.0
TraesCS6B01G207100.1 Wheat cytosol 0.0 0.0
TraesCS6D01G166700.1 Wheat cytosol, golgi 0.0 0.0
TraesCS7A01G372600.1 Wheat cytosol 0.0 0.0
TraesCS7B01G254400.1 Wheat cytosol 0.0 0.0
TraesCS7D01G350300.1 Wheat cytosol 0.0 0.0
VIT_09s0002g05800.t01 Wine grape cytosol 0.0 0.0
Zm00001d016439_P003 Maize cytosol, extracellular, plasma membrane 0.0 0.0
AT5G19990.1 Thale cress cytosol 0.0 0.0
Bra011079.1-P Field mustard cytosol 0.0 0.0
AT5G20000.1 Thale cress cytosol 0.0 0.0
Bra000999.1-P Field mustard cytosol, mitochondrion 0.0 0.0
Bra002279.1-P Field mustard cytosol 0.0 0.0
Bra002662.1-P Field mustard cytosol 0.0 0.0
Bra005023.1-P Field mustard cytosol 0.0 0.0
Bra006529.1-P Field mustard cytosol 0.0 0.0
Bra006775.1-P Field mustard cytosol 0.0 0.0
Bra010342.1-P Field mustard cytosol 0.0 0.0
HORVU7Hr1G084550.2 Barley cytosol 0.0 0.0
Bra020378.1-P Field mustard cytosol 0.0 0.0
Bra030922.1-P Field mustard cytosol 0.0 0.0
Bra039688.1-P Field mustard cytosol 0.0 0.0
Bra040569.1-P Field mustard cytosol 0.0 0.0
CDX70903 Canola cytosol 0.0 0.0
EER88603 Sorghum cytosol 0.0 0.0
GSMUA_Achr7P09950_001 Banana cytosol 0.0 0.0
HORVU6Hr1G036990.7 Barley cytosol 0.0 0.0
Protein Annotations
MapMan:23.5.1.4Gene3D:3.40.50.300EnsemblPlantsGene:Bra006530EnsemblPlants:Bra006530.1EnsemblPlants:Bra006530.1-PGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0005575
GO:GO:0005576GO:GO:0005618GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730
GO:GO:0005737GO:GO:0005794GO:GO:0005829GO:GO:0005886GO:GO:0006810GO:GO:0006913
GO:GO:0006950GO:GO:0008150GO:GO:0009628GO:GO:0009651GO:GO:0015031GO:GO:0016020
GO:GO:0016787GO:GO:0030312GO:GO:0046686GO:GO:0048046InterPro:IPR002041UniProt:M4CQP1
InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00627PFscan:PS51418PANTHER:PTHR24071PANTHER:PTHR24071:SF7
InterPro:Ran_GTPaseSMART:SM00173SMART:SM00174SMART:SM00175SMART:SM00176SUPFAM:SSF52540
InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI00019AA89CSEG:seg:
Description
AT5G20010 (E=2e-118) RAN-1, RAN1, ATRAN1 | RAN-1; GTP binding / GTPase/ protein binding
Coordinates
chrA03:+:3938068..3939081
Molecular Weight (calculated)
25163.9 Da
IEP (calculated)
6.862
GRAVY (calculated)
-0.435
Length
221 amino acids
Sequence
(BLAST)
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAV IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ESPALAPPEV HIDVAEQQRN
201: EADLIAAAAQ PLPDDDDDAF E
Best Arabidopsis Sequence Match ( AT5G20020.1 )
(BLAST)
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ESPALAPPEV HLDIAAQQQN
201: EADLAAAAAQ PLPDDDDDAF E
Arabidopsis Description
RAN2GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UQ77]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.