Factsheet for Bra020076.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra005847.1-P
Bra006526.1-P
Bra007528.1-P
Bra009093.1-P
Bra011536.1-P
Bra014221.1-P
Bra014494.1-P
Bra017658.1-P
Bra018126.1-P
Bra020076.1-P
Bra024408.1-P
Bra027459.1-P
Bra029613.1-P
Bra031849.1-P
Bra032668.1-P
Bra033217.1-P
Bra034628.1-P
Bra039652.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19960.1	Bra032668.1-P	AT1G02140.1	21798944
AT5G19960.1	Bra033217.1-P	AT1G02140.1	21798944
AT5G19960.1	Bra014221.1-P	AT1G49850.1	21798944
AT5G19960.1	Bra039652.1-P	AT1G49850.1	21798944
AT5G19960.1	Bra000304.1-P	AT2G43370.1	21798944
AT5G19960.1	Bra029613.1-P	AT3G06980.1	21798944
AT5G19960.1	Bra018126.1-P	AT3G47620.1	21798944
AT5G19960.1	Bra007528.1-P	AT3G60360.1	21798944
AT5G19960.1	Bra014494.1-P	AT3G60360.1	21798944
AT5G19960.1	Bra011536.1-P	AT4G34460.1	21798944
AT5G19960.1	Bra017658.1-P	AT4G34460.1	21798944
AT5G19960.1	Bra034628.1-P	AT4G34460.1	21798944
AT5G19960.1	Bra005847.1-P	AT5G05190.1	21798944
AT5G19960.1	Bra009093.1-P	AT5G05190.1	21798944
AT5G19960.1	Bra006526.1-P	AT5G19960.1	21798944
AT5G19960.1	Bra020076.1-P	AT5G19960.1	21798944
AT5G19960.1	Bra027459.1-P	AT5G42820.1	21798944
AT5G19960.1	Bra024408.1-P	AT5G65683.1	21798944
AT5G19960.1	Bra031849.1-P	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44955	Canola	nucleus	92.57	92.57
AT5G19960.1	Thale cress	cytosol	55.73	53.41
Bra006526.1-P	Field mustard	nucleus	52.63	38.72
KXG29764	Sorghum	nucleus	35.29	34.65
Zm00001d016410_P006	Maize	nucleus	34.67	34.04
GSMUA_Achr7P08450_001	Banana	nucleus	38.08	33.98
Zm00001d053613_P001	Maize	nucleus	34.06	33.74
KRH56658	Soybean	nucleus	37.77	33.42
VIT_11s0016g04610.t01	Wine grape	nucleus	35.29	32.85
KRH03775	Soybean	nucleus	35.91	31.78
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	38.7	31.73
TraesCS6A01G178400.1	Wheat	nucleus	32.82	30.37
TraesCS6D01G166200.2	Wheat	nucleus	32.2	29.63
TraesCS6B01G205800.2	Wheat	nucleus	31.89	29.34
HORVU6Hr1G036810.5	Barley	nucleus	30.96	27.86
Bra018163.1-P	Field mustard	nucleus	16.72	18.43

Protein Annotations

EnsemblPlants:Bra020076.1	EnsemblPlants:Bra020076.1-P	EnsemblPlantsGene:Bra020076	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	ncoils:Coil	PANTHER:PTHR23147	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00025432F6	UniProt:M4DU83	MapMan:35.2	:	:

Description

AT5G19960 (E=9e-124) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA02:+:4937095..4939199

Molecular Weight (calculated)

36656.1 Da

IEP (calculated)

5.383

GRAVY (calculated)

-1.113

Length

323 amino acids

Sequence
(BLAST)

001: MTMDDNNSVY VGGLPYDVTE EALRRVFSPY GTVHDIKIVN DQSVRGKCYG FVTFSNRRSA DDAIQDMDGN IIGGRVVRVN EVTTRFGGRL SSGAQGRFQP
101: QSPDERSDFS WERDRYRERD RSQERGRDRY EHSRGFERRS DHGMVDRNGY KERGFEGEEG GDWRGDSGRG VNGNSDHEGR SQETKREDSS MLDGGRGRDG
201: KDHISNSNGD HSFQVKGDIE ALIKTRDLLH DEVLVMEGRL RAKEDLCAEL QQKFETLEDL LNGEKKLTSQ RRKELAKLHK SYSRVRECSD NLKDCEQELQ
301: SLVNSVAREG VVGADEGLEN GYA

Best Arabidopsis Sequence Match ( AT5G19960.1 )
(BLAST)

001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP

Arabidopsis Description

Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.