Factsheet for Bra009093.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000234.1-P
Bra003085.1-P
Bra004639.1-P
Bra009226.1-P
Bra012964.1-P
Bra012987.1-P
Bra014140.1-P
Bra021277.1-P
Bra022250.1-P
Bra022624.1-P
Bra033505.1-P
Bra035933.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05190.1	Bra014140.1-P	AT1G48480.1	15618630
AT5G05190.1	Bra000234.1-P	AT2G41680.1	21798944
AT5G05190.1	Bra004639.1-P	AT2G41680.1	21798944
AT5G05190.1	Bra021277.1-P	AT3G17840.1	15618630
AT5G05190.1	Bra022250.1-P	AT3G17840.1	15618630
AT5G05190.1	Bra033505.1-P	AT4G15730.1	21798944
AT5G05190.1	Bra009226.1-P	AT5G06780.1	21798944
AT5G05190.1	Bra003085.1-P	AT5G53060.1	21798944
AT5G05190.1	Bra022624.1-P	AT5G53060.1	21798944
AT5G05190.1	Bra012987.1-P	AT5G61010.1	21798944
AT5G05190.1	Bra012964.1-P	AT5G61380.1	21798944
AT5G05190.1	Bra035933.1-P	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70170	Canola	nucleus	98.26	98.09
CDX98822	Canola	nucleus	92.35	93.16
AT5G05190.1	Thale cress	nucleus	58.61	54.8
Bra005847.1-P	Field mustard	nucleus	63.3	54.74
PGSC0003DMT400059103	Potato	nucleus	24.7	15.06
Solyc03g095610.2.1	Tomato	mitochondrion, nucleus	21.04	13.78
KRH72549	Soybean	nucleus	25.04	13.65
KRH53706	Soybean	nucleus	23.13	13.56
VIT_13s0067g03220.t01	Wine grape	mitochondrion, nucleus	24.35	11.63
KRH16932	Soybean	nucleus	23.3	11.44
Bra007244.1-P	Field mustard	nucleus	9.22	7.37
Bra003240.1-P	Field mustard	nucleus	13.74	5.37

Protein Annotations

EnsemblPlants:Bra009093.1	EnsemblPlants:Bra009093.1-P	EnsemblPlantsGene:Bra009093	InterPro:Zinc_ribbon_12	PANTHER:PTHR31105	PANTHER:PTHR31105:SF21
PFAM:PF11331	SEG:seg	UniParc:UPI0002544A75	UniProt:M4CXZ6	MapMan:35.1	:

Description

AT5G05190 (E=2e-121) | unknown protein

Coordinates

chrA10:+:15227206..15229065

Molecular Weight (calculated)

64806.4 Da

IEP (calculated)

8.216

GRAVY (calculated)

-1.144

Length

575 amino acids

Sequence
(BLAST)

001: MASKSGQRVR LVKCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRTIAPNT TPSAGEAEGA HASEPETNNV SISSEQDTVL PPTTGRSSGQ VDEKARDVSM
101: ESTEKQPGDS IGEEGNENQL QEHSPSDSDK NESEDNSSRF KSDVKPVAEA MGEGTSSGSS NAGHVVDART SNSSSPVEEE QNEDDYFFNR HRESTDDLPA
201: NKTPSTYDGS ESSSDEREEL LDENEQWKAL QEISSVKFQM QRYPENLKEQ RRGSSSSSTF YEKRPSNVTP TTYMERYQNR SLQLEGPGGR LGRQGRRHVT
301: EQLRPNLPLY PREPYNTRVS PSYPSQDEFD GYSRAHSLQR PSYESVVNHM YHNSTRARGR GQGSRFSGEM TNDRRNHPGW YSGSYSSYPA SPQRPPMEQP
401: PAYYPRRWSH EIVSDAEDHQ RYRHAGHHHH DIQARRLKER QQRVAKRHIR PTAGGAPFVS CYKCSESLQL PVDFLIFKRK YHLLRCGRCT TVLRFSLQSR
501: THLVPAVKRD INANRSSNTT SESPRDKAPS RKPEKLSSSA QEEEVPLARG SPLHRLMGYS TVSQVFKASQ RPPSL

Best Arabidopsis Sequence Match ( AT5G05190.1 )
(BLAST)

001: MASQTGQKIR LVRCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRNIAPSS TPSAGETERA QANEPQSVPE TNNVSSSSGQ DTVLPSSPGR SVDQEYEKGR
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI

Arabidopsis Description

EDR4Protein ENHANCED DISEASE RESISTANCE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.