Factsheet for Bra004639.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000234.1-P
Bra000729.1-P
Bra004639.1-P
Bra014221.1-P
Bra015721.1-P
Bra025576.1-P
Bra033354.1-P
Bra039652.1-P
Bra040118.1-P
Bra040410.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	Bra033354.1-P	AT1G02870.1	21798944
AT2G41680.1	Bra014221.1-P	AT1G49850.1	21798944
AT2G41680.1	Bra039652.1-P	AT1G49850.1	21798944
AT2G41680.1	Bra015721.1-P	AT1G76760.1	21798944
AT2G41680.1	Bra000234.1-P	AT2G41680.1	21798944
AT2G41680.1	Bra004639.1-P	AT2G41680.1	21798944
AT2G41680.1	Bra040118.1-P	AT3G04860.1	21798944
AT2G41680.1	Bra040410.1-P	AT3G04860.1	21798944
AT2G41680.1	Bra000729.1-P	AT4G10930.1	21798944
AT2G41680.1	Bra025576.1-P	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79923	Canola	mitochondrion, plastid	96.93	94.57
CDY23835	Canola	plastid	96.74	92.82
Bra000234.1-P	Field mustard	plastid	86.37	88.06
AT2G41680.1	Thale cress	plastid	89.25	87.9
GSMUA_Achr8P09560_001	Banana	cytosol	36.66	82.68
PGSC0003DMT400070106	Potato	cytosol	36.28	81.82
HORVU2Hr1G023170.1	Barley	cytosol	74.28	80.29
GSMUA_Achr8P09570_001	Banana	cytosol	26.1	77.71
KRH33290	Soybean	nucleus	76.01	76.3
KRH72015	Soybean	nucleus	76.2	76.05
VIT_08s0007g08760.t01	Wine grape	plastid	76.39	75.24
Os07t0657900-02	Rice	plastid	73.9	74.76
TraesCS2B01G154700.1	Wheat	plastid	74.09	74.23
Solyc10g080080.1.1	Tomato	plastid	76.97	73.85
PGSC0003DMT400060907	Potato	plastid	75.82	72.74
KXG36845	Sorghum	plastid	72.94	72.52
Zm00001d022381_P016	Maize	plastid	73.7	69.44
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	73.9	68.02
Solyc04g016010.2.1	Tomato	nucleus	68.52	66.48
TraesCS2A01G132200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.74	63.48
Bra017711.1-P	Field mustard	cytosol	30.52	50.96
Bra037274.1-P	Field mustard	mitochondrion	29.17	45.51
Bra010533.1-P	Field mustard	mitochondrion	30.71	45.45
PGSC0003DMT400070103	Potato	plastid	18.04	43.72
Bra024516.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	23.8	42.47
Bra031685.1-P	Field mustard	cytosol	8.45	41.12
Bra025646.1-P	Field mustard	cytosol	5.95	39.74
Bra037273.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	34.74	35.08
Bra025645.1-P	Field mustard	cytosol	9.21	21.52

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	Gene3D:3.40.30.10	Gene3D:3.50.50.60	EnsemblPlantsGene:Bra004639	EnsemblPlants:Bra004639.1
EnsemblPlants:Bra004639.1-P	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	InterPro:IPR013766	InterPro:IPR036188	UniProt:M4CKA4	PFAM:PF00085	PFAM:PF07992
PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573	PFscan:PS51352	PANTHER:PTHR42863	PANTHER:PTHR42863:SF1
InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	SUPFAM:SSF52833	TIGRFAMs:TIGR01292	InterPro:Thioredox_Rdtase
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000254778F	SEG:seg	:	:

Description

AT2G41680 (E=7e-262) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase

Coordinates

chrA05:-:1178112..1181314

Molecular Weight (calculated)

57610.5 Da

IEP (calculated)

6.837

GRAVY (calculated)

-0.351

Length

521 amino acids

Sequence
(BLAST)

001: MAASPKIGIG ISSMSTHRVA TASSALSPPP HLFFLTTRRR DSSFILRQQT RTRSDSLRLR ISASANSPSS SDEIIENVVI IGSGPAGYTA AIYAARANLK
101: PVVFEGYQMG GVPGGQLMTT TEVENFPGFP EGITGPDLME RMRKQAERWG AELYPEDVES LSVKTAPFTV QSSERKVKCH SIIYATGATA KRLRLPREEE
201: FWSRGISACA ICDGASPLFK GQVLAVVGGG DTATEEALYL TKYARHVHLL VRRDQLRASK AMQDRVINNP NITVHYNTET VDVLSNTKGQ MSGILLRRVD
301: TGEETELEAK GLFYGIGHSP NSQLLEGQVE LDSSGYVLVR EGTSNTSVEG VFAAGDVQDH EWRQAVTAAG SGCMAALSAE RYLTSNNLLV EFHQPQTEET
401: KKEFTQRDVQ EKFDITLTKH RGQYALRKLY HESPRVICVL YTSPTCGPCR TLKPILNKVV DEYHNDVHFV EIDIEEDQEI AEAAGIMGTP CVQFFKNKEM
501: LRTVSGVKMK KEYREFIEAN K

Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)

001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK

Arabidopsis Description

NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.