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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 5
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
EER93250
EER95307
EES02107
EES19406
KXG23810
KXG24971
KXG36845
OQU84317
OQU90135

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G41680.1 EES19406 AT1G02870.1 21798944
AT2G41680.1 EER95307 AT1G49850.1 21798944
AT2G41680.1 KXG23810 AT1G49850.1 21798944
AT2G41680.1 EES02107 AT1G76760.1 21798944
AT2G41680.1 KXG36845 AT2G41680.1 21798944
AT2G41680.1 EER93250 AT3G04860.1 21798944
AT2G41680.1 OQU90135 AT3G04860.1 21798944
AT2G41680.1 OQU84317 AT4G10930.1 21798944
AT2G41680.1 KXG24971 AT5G40440.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d022381_P016 Maize plastid 96.18 91.14
HORVU2Hr1G023170.1 Barley cytosol 80.34 87.34
Os07t0657900-02 Rice plastid 83.59 85.05
GSMUA_Achr8P09560_001 Banana cytosol 36.83 83.55
TraesCS2B01G154700.1 Wheat plastid 81.3 81.92
PGSC0003DMT400070106 Potato cytosol 34.92 79.22
GSMUA_Achr8P09570_001 Banana cytosol 25.95 77.71
KRH33290 Soybean nucleus 73.66 74.37
KRH72015 Soybean nucleus 73.47 73.75
Bra004639.1-P Field mustard plastid 72.52 72.94
Bra000234.1-P Field mustard plastid 70.99 72.8
CDY35405 Canola plastid 70.99 72.8
CDY22534 Canola plastid 70.8 72.6
VIT_08s0007g08760.t01 Wine grape plastid 72.52 71.83
GSMUA_Achr11P... Banana endoplasmic reticulum, vacuole 77.29 71.55
CDX79923 Canola mitochondrion, plastid 72.71 71.35
PGSC0003DMT400060907 Potato plastid 73.86 71.27
Solyc10g080080.1.1 Tomato plastid 73.86 71.27
CDY23835 Canola plastid 73.09 70.53
AT2G41680.1 Thale cress plastid 70.8 70.13
TraesCS2A01G132200.1 Wheat endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 77.86 68.34
Solyc04g016010.2.1 Tomato nucleus 66.79 65.18
EES07372 Sorghum cytosol, mitochondrion 32.25 51.06
EES09948 Sorghum mitochondrion 32.25 49.85
EER89710 Sorghum mitochondrion 33.21 46.9
PGSC0003DMT400070103 Potato plastid 18.32 44.65
Protein Annotations
KEGG:00450+1.8.1.9MapMan:10.5.2Gene3D:3.40.30.10Gene3D:3.50.50.60UniProt:A0A1B6QG08InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_domGO:GO:0003674GO:GO:0003824GO:GO:0004791GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975GO:GO:0006950
GO:GO:0008047GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009507
GO:GO:0009536GO:GO:0009570GO:GO:0009987GO:GO:0010380GO:GO:0010581GO:GO:0016491
GO:GO:0016671GO:GO:0019430GO:GO:0019725GO:GO:0030234GO:GO:0042744GO:GO:0042802
GO:GO:0045454GO:GO:0055114InterPro:IPR013766InterPro:IPR036188EnsemblPlants:KXG36845ProteinID:KXG36845
ProteinID:KXG36845.1ProteinID:OQU90400.1PFAM:PF00085PFAM:PF07992PRINTS:PR00368PRINTS:PR00469
ScanProsite:PS00573PFscan:PS51352PANTHER:PTHR42863PANTHER:PTHR42863:SF1InterPro:Pyr_nucl-diS_OxRdtase_2_ASInterPro:Pyridine_nuc-diS_OxRdtase_2
EnsemblPlantsGene:SORBI_3002G401800SUPFAM:SSF51905SUPFAM:SSF52833TIGRFAMs:TIGR01292InterPro:Thioredox_RdtaseInterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domainUniParc:UPI00081ABE2ASEG:seg:::
Description
hypothetical protein
Coordinates
chr2:+:75241315..75247264
Molecular Weight (calculated)
56981.2 Da
IEP (calculated)
6.626
GRAVY (calculated)
-0.211
Length
524 amino acids
Sequence
(BLAST)
001: MAVTRVAVAA ALSAAPLSSR RHRVALPSSC RLLPAAAATC CNSRAPMPLQ AAAAAPAAGA VDEETPASPP PSDASKGVEN LVIIGSGPAG YTAAIYAARA
101: NLKPVVFEGF QVGGVPGGQL MTTTEVENFP GFPEGITGPD LMDRMRKQAE RWGAELHQED VEFVNVKSSP FIIRSSDREV KCHSLIIATG ATAKRLRLPR
201: EDEFWSRGIS ACAICDGASP LFKGQVLAVV GGGDVATEEA IYLTKYARHV HLLVRKDKLR ASKAMQDRVL NNPNITVHFN TEAMDVVSND KGQMSGIHLK
301: RRDTGEESVL NVKGLFYGIG HTPNSQLLQG QIELDSAGYI LVKEGSAKTS VDGVFAAGDV QDHEWRQAIT AAGSGCVAAL SVERYLVAND LLVEFHQPVQ
401: EETKKDITDK DVEMGFDISH RKHKGQYALR KLYHESPRLI CVLYTSPTCG PCRTLKPILN KVIDEYDEFV HLVEIDIEED PEIAEAAGIM GTPCVQFFKN
501: KEMLRTVSGV KRKKEYREFI EENK
Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)
001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK
Arabidopsis Description
NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.