Factsheet for Solyc10g080080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g097790.2.1
Solyc01g107290.2.1
Solyc03g019850.2.1
Solyc04g016010.2.1
Solyc04g071560.2.1
Solyc09g075030.2.1
Solyc10g080080.1.1
Solyc12g055910.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	Solyc09g075030.2.1	AT1G02870.1	21798944
AT2G41680.1	Solyc01g107290.2.1	AT1G49850.1	21798944
AT2G41680.1	Solyc04g071560.2.1	AT1G76760.1	21798944
AT2G41680.1	Solyc04g016010.2.1	AT2G41680.1	21798944
AT2G41680.1	Solyc10g080080.1.1	AT2G41680.1	21798944
AT2G41680.1	Solyc01g097790.2.1	AT3G04860.1	21798944
AT2G41680.1	Solyc12g055910.1.1	AT4G10930.1	21798944
AT2G41680.1	Solyc03g019850.2.1	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060907	Potato	plastid	93.74	93.74
GSMUA_Achr8P09560_001	Banana	cytosol	35.36	83.12
HORVU2Hr1G023170.1	Barley	cytosol	70.53	79.46
GSMUA_Achr8P09570_001	Banana	cytosol	25.41	78.86
KRH33290	Soybean	nucleus	74.03	77.46
Bra004639.1-P	Field mustard	plastid	73.85	76.97
Bra000234.1-P	Field mustard	plastid	72.01	76.52
KRH72015	Soybean	nucleus	73.48	76.44
CDY35405	Canola	plastid	71.82	76.32
CDY22534	Canola	plastid	71.64	76.13
VIT_08s0007g08760.t01	Wine grape	plastid	73.66	75.61
AT2G41680.1	Thale cress	plastid	73.3	75.24
Solyc04g016010.2.1	Tomato	nucleus	74.4	75.23
CDX79923	Canola	mitochondrion, plastid	73.85	75.09
Os07t0657900-02	Rice	plastid	70.53	74.37
KXG36845	Sorghum	plastid	71.27	73.86
CDY23835	Canola	plastid	73.85	73.85
TraesCS2B01G154700.1	Wheat	plastid	70.53	73.65
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	73.66	70.67
Zm00001d022381_P016	Maize	plastid	71.27	69.98
TraesCS2A01G132200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	70.35	63.99
Solyc03g032000.2.1	Tomato	cytosol, extracellular	29.83	49.39
Solyc02g082250.2.1	Tomato	mitochondrion	31.31	46.32

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	Gene3D:3.40.30.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019430	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	InterPro:IPR036188
UniProt:K4D2P9	PFAM:PF00085	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573
PFscan:PS51352	PANTHER:PTHR42863	PANTHER:PTHR42863:SF1	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc10g080080.1	EnsemblPlants:Solyc10g080080.1.1	TIGRFAMs:TIGR01292	InterPro:Thioredox_Rdtase	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0002769328	SEG:seg	:	:	:

Description

Thioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:K4D2P9]

Coordinates

chr10:-:61471191..61477409

Molecular Weight (calculated)

58955.3 Da

IEP (calculated)

6.835

GRAVY (calculated)

-0.231

Length

543 amino acids

Sequence
(BLAST)

001: MANTTPNITN SVGIGIRIRT KIRPASTSMA ATPAALSTGH CIPTGLLVIN SGTSRRGGAA RVDSVNGHLT RSRASSFSIR AAAEVEPVGT SSSAQGIENL
101: VIIGSGPAGY TAAIYAARAN LKPVVFEGFQ AGGVPGGQLM TTTEVENFPG FPEGITGPDL MDRMRRQAER WGAELYQEDV EFIDVKNAPF TVHSSERKVK
201: CHSIIVATGA NARRLGLPRE DEFWSRGISA CAICDGASPL FKGQVLAVVG GGDTATEEAI YLTKYARHVH LLVRKDQLRA SRAMQDRVFN NPNITVHFNT
301: ETVDVVSNPK GQMSGILIRK ADTQEESVLE AKGLFYGIGH SPNSQLLEGQ VELDNSGYIL VKEGTANTSV EGVFAAGDVQ DHEWRQAITA AGSGCVAALS
401: VERYLTSKNL LLEFHQPPTE EVKKELSEKD VQEGFDITLT KHKGQYALRK LYHESPRLMC VLYTSPTCGP CRTLKPILSK VIDEFDKDVH LVEIDITEDP
501: EIAEAAGIMG TPCVQFFKNK EMLRTVSGVK MKREYREFIE ANK

Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)

001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK

Arabidopsis Description

NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.