Factsheet for Solyc03g032000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048037	Potato	cytosol	99.39	99.39
CDY26806	Canola	cytosol, mitochondrion, peroxisome	31.1	80.31
TraesCS6A01G278000.1	Wheat	cytosol, mitochondrion	78.96	78.01
HORVU6Hr1G070120.1	Barley	cytosol, mitochondrion	78.66	77.95
TraesCS6D01G258600.1	Wheat	extracellular, golgi, unclear	78.66	77.71
Os02t0713400-01	Rice	extracellular, plasma membrane	78.35	77.64
TraesCS6B01G306300.1	Wheat	cytosol	78.35	77.41
Solyc02g082250.2.1	Tomato	mitochondrion	86.59	77.38
EES07372	Sorghum	cytosol, mitochondrion	77.44	76.74
Bra017711.1-P	Field mustard	cytosol	69.82	73.4
KRH76499	Soybean	nucleus	81.1	71.89
Zm00001d017823_P001	Maize	cytosol	77.13	71.88
VIT_04s0044g01750.t01	Wine grape	mitochondrion	82.01	71.73
CDX74655	Canola	peroxisome, plastid	37.5	71.51
Bra024516.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	63.41	71.23
KRH28954	Soybean	nucleus	80.18	70.7
CDY66403	Canola	cytosol, nucleus, peroxisome, plastid	63.72	70.13
Bra037274.1-P	Field mustard	mitochondrion	71.34	70.06
EES09948	Sorghum	mitochondrion	72.26	69.91
AT2G17420.1	Thale cress	mitochondrion, plastid	81.1	69.45
AT4G35460.1	Thale cress	mitochondrion, plastid	79.27	69.33
CDX72537	Canola	mitochondrion	75.91	69.17
CDY41653	Canola	mitochondrion	78.35	68.72
TraesCS7B01G194200.1	Wheat	golgi	77.13	68.56
EER89710	Sorghum	mitochondrion	77.44	68.46
CDY24812	Canola	mitochondrion	77.74	68.36
TraesCS7D01G229100.1	Wheat	mitochondrion	76.83	68.29
TraesCS7A01G225400.2	Wheat	mitochondrion	77.13	68.19
CDY40633	Canola	mitochondrion	75.61	68.13
Zm00001d037429_P001	Maize	mitochondrion	76.52	67.84
Zm00001d053118_P001	Maize	cytosol	71.95	67.62
CDY30367	Canola	mitochondrion	70.43	67.35
Bra010533.1-P	Field mustard	mitochondrion	72.26	67.33
CDY07845	Canola	plastid	70.43	67.15
CDY72417	Canola	cytosol	15.55	67.11
CDY22142	Canola	cytosol	15.55	67.11
VIT_05s0049g00110.t01	Wine grape	cytosol	21.65	66.98
GSMUA_Achr9P27590_001	Banana	mitochondrion	71.34	66.1
CDY05719	Canola	cytosol	35.98	65.92
Bra025646.1-P	Field mustard	cytosol	15.55	65.38
HORVU7Hr1G046890.1	Barley	plastid	76.83	64.95
KRH07823	Soybean	mitochondrion	75.0	62.44
CDY58054	Canola	cytosol	17.99	55.14
Bra031685.1-P	Field mustard	cytosol	17.68	54.21
CDX74431	Canola	cytosol	22.56	50.34
Bra037273.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.91	48.26
CDY30366	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	75.91	48.16
CDY13332	Canola	plastid	38.11	45.79
CDY26805	Canola	vacuole	20.12	43.42
CDY70273	Canola	cytosol, peroxisome	16.16	41.41
CDY26807	Canola	cytosol, mitochondrion	77.74	38.58
Os04t0524136-00	Rice	plastid	19.82	32.66
Solyc10g080080.1.1	Tomato	plastid	49.39	29.83
Solyc04g016010.2.1	Tomato	nucleus	45.43	27.75
Bra025645.1-P	Field mustard	cytosol	17.99	26.46

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0055114	InterPro:IPR036188	UniProt:K4BFH1	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469
ScanProsite:PS00573	PANTHER:PTHR42863	PANTHER:PTHR42863:SF9	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905
EnsemblPlantsGene:Solyc03g032000.2	EnsemblPlants:Solyc03g032000.2.1	TIGRFAMs:TIGR01292	InterPro:Thioredox_Rdtase	UniParc:UPI0002767637	SEG:seg

Description

Thioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:K4BFH1]

Coordinates

chr3:+:4500472..4504242

Molecular Weight (calculated)

34917.5 Da

IEP (calculated)

5.096

GRAVY (calculated)

-0.083

Length

328 amino acids

Sequence
(BLAST)

001: MADIQKTKVC IIGSGPAAHT AAIYAARAEL KPILFEGWMA NDIAPGGQLT TTSEVENFPG FPEGLAGGEL MDRCRAQSVR FGTQIFTETV SNVDFSASPF
101: KVMSDERTVL ADTVIIATGA VAKRLEFPGS GDGANGYWNR GISACAVCDG AAPIFRNKPL AVIGGGDSAM EEATFLTKYG SKVYIIHRRD EFRASKIMRN
201: RALSNPKIEV IWNSAVVEAY GEKSLGGLKV ENVVTGEVSD LEVSGLFFAI GHEPATKFLD GQLQLDAERY VATVPGTTKT SIRGVFAAGD VQDKKYRQAI
301: TAAGSGCMAA LDAEHYLQEL GAQEGKSD

Best Arabidopsis Sequence Match ( AT2G17420.1 )
(BLAST)

001: MCWISMSQSR FIIKSLFSTA GGFLLGSALS NPPSLATAFS SSSSSSSAAA AVDMETHKTK VCIVGSGPAA HTAAIYASRA ELKPLLFEGW MANDIAPGGQ
101: LTTTTDVENF PGFPEGILGI DIVEKFRKQS ERFGTTIFTE TVNKVDFSSK PFKLFTDSRT VLADSVIIST GAVAKRLSFT GSGEGNGGFW NRGISACAVC
201: DGAAPIFRNK PLVVIGGGDS AMEEANFLTK YGSKVYIIHR RDTFRASKIM QQRALSNPKI EVIWNSAVVE AYGDENGRVL GGLKVKNVVT GDVSDLKVSG
301: LFFAIGHEPA TKFLDGQLEL DEDGYVVTKP GTTKTSVVGV FAAGDVQDKK YRQAITAAGT GCMAALDAEH YLQEIGSQEG KSD

Arabidopsis Description

NTR2Thioredoxin reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39242]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.