Factsheet for TraesCS6D01G258600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, extracellular

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

extracellular: 19786127
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G278000.1	Wheat	cytosol, mitochondrion	99.4	99.4
TraesCS6B01G306300.1	Wheat	cytosol	99.1	99.1
HORVU6Hr1G070120.1	Barley	cytosol, mitochondrion	96.99	97.28
EES07372	Sorghum	cytosol, mitochondrion	90.96	91.24
Os02t0713400-01	Rice	extracellular, plasma membrane	89.46	89.73
Zm00001d017823_P001	Maize	cytosol	90.06	84.94
CDY26806	Canola	cytosol, mitochondrion, peroxisome	30.72	80.31
Solyc03g032000.2.1	Tomato	cytosol, extracellular	77.71	78.66
PGSC0003DMT400048037	Potato	cytosol	77.71	78.66
EES09948	Sorghum	mitochondrion	80.12	78.47
TraesCS7D01G229100.1	Wheat	mitochondrion	86.45	77.78
Zm00001d053118_P001	Maize	cytosol	79.52	75.64
GSMUA_Achr9P27590_001	Banana	mitochondrion	77.71	72.88
Bra017711.1-P	Field mustard	cytosol	68.37	72.76
PGSC0003DMT400035477	Potato	mitochondrion	79.22	71.66
Solyc02g082250.2.1	Tomato	mitochondrion	78.61	71.12
KRH76499	Soybean	nucleus	76.51	68.65
CDY22142	Canola	cytosol	15.66	68.42
CDY72417	Canola	cytosol	15.66	68.42
VIT_04s0044g01750.t01	Wine grape	mitochondrion	76.51	67.73
KRH28954	Soybean	nucleus	75.6	67.47
CDX74655	Canola	peroxisome, plastid	34.94	67.44
Bra037274.1-P	Field mustard	mitochondrion	67.77	67.37
CDY40633	Canola	mitochondrion	73.8	67.31
CDX72537	Canola	mitochondrion	72.89	67.22
AT4G35460.1	Thale cress	mitochondrion, plastid	75.9	67.2
CDY41653	Canola	mitochondrion	75.3	66.84
CDY24812	Canola	mitochondrion	75.0	66.76
AT2G17420.1	Thale cress	mitochondrion, plastid	76.51	66.32
Bra024516.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	58.13	66.1
Bra010533.1-P	Field mustard	mitochondrion	69.88	65.91
CDY66403	Canola	cytosol, nucleus, peroxisome, plastid	59.04	65.77
CDY07845	Canola	plastid	67.47	65.12
CDY30367	Canola	mitochondrion	66.87	64.72
Bra025646.1-P	Field mustard	cytosol	15.06	64.1
KRH07823	Soybean	mitochondrion	74.1	62.44
VIT_05s0049g00110.t01	Wine grape	cytosol	19.88	62.26
CDY58054	Canola	cytosol	18.98	58.88
CDY05719	Canola	cytosol	31.33	58.1
Bra031685.1-P	Field mustard	cytosol	18.67	57.94
CDX74431	Canola	cytosol	22.29	50.34
CDY30366	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	71.69	46.03
Bra037273.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.39	45.93
CDY70273	Canola	cytosol, peroxisome	17.17	44.53
CDY26805	Canola	vacuole	19.88	43.42
CDY13332	Canola	plastid	35.54	43.22
CDY26807	Canola	cytosol, mitochondrion	73.49	36.91
Bra025645.1-P	Field mustard	cytosol	19.88	29.6

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0055114	InterPro:IPR036188	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573
PANTHER:PTHR42863	PANTHER:PTHR42863:SF9	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	TIGRFAMs:TIGR01292
InterPro:Thioredox_Rdtase	EnsemblPlantsGene:TraesCS6D01G258600	EnsemblPlants:TraesCS6D01G258600.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:-:364494217..364496919

Molecular Weight (calculated)

34878.3 Da

IEP (calculated)

6.165

GRAVY (calculated)

-0.025

Length

332 amino acids

Sequence
(BLAST)

001: MEGSAAPAPL RTRVCIIGSG PAAHTAAIYA ARAELKPVLF EGWMANDIAA GGQLTTTTDV ENFPGFPTGI MGIDLMDNCR AQSARFGTNI LSETVTEVDF
101: SARPFRVTSD STTVLADTVV VATGAVARRL HFPGSDTYWN RGISACAVCD GAAPIFRNKP IAVIGGGDSA MEEGNFLTKY GSQVYIIHRR NTFRASKIMQ
201: ARALSNPKIQ VVWDSEVVEA YGGAGGGPLA GVKVKNLVTG EVSDLKVSGL FFAIGHEPAT KFLNGQLELH ADGYVATKPG STHTSVEGVF AAGDVQDKKY
301: RQAITAAGSG CMAALDAEHY LQEVGAQEGK SD

Best Arabidopsis Sequence Match ( AT2G17420.1 )
(BLAST)

001: MCWISMSQSR FIIKSLFSTA GGFLLGSALS NPPSLATAFS SSSSSSSAAA AVDMETHKTK VCIVGSGPAA HTAAIYASRA ELKPLLFEGW MANDIAPGGQ
101: LTTTTDVENF PGFPEGILGI DIVEKFRKQS ERFGTTIFTE TVNKVDFSSK PFKLFTDSRT VLADSVIIST GAVAKRLSFT GSGEGNGGFW NRGISACAVC
201: DGAAPIFRNK PLVVIGGGDS AMEEANFLTK YGSKVYIIHR RDTFRASKIM QQRALSNPKI EVIWNSAVVE AYGDENGRVL GGLKVKNVVT GDVSDLKVSG
301: LFFAIGHEPA TKFLDGQLEL DEDGYVVTKP GTTKTSVVGV FAAGDVQDKK YRQAITAAGT GCMAALDAEH YLQEIGSQEG KSD

Arabidopsis Description

NTR2Thioredoxin reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39242]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.