CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24812	Canola	mitochondrion	97.06	97.32
CDY40633	Canola	mitochondrion	84.22	86.54
AT4G35460.1	Thale cress	mitochondrion, plastid	86.1	85.87
CDX72537	Canola	mitochondrion	82.62	85.83
CDY26806	Canola	cytosol, mitochondrion, peroxisome	29.14	85.83
PGSC0003DMT400048037	Potato	cytosol	69.25	78.96
Solyc03g032000.2.1	Tomato	cytosol, extracellular	68.72	78.35
CDY30367	Canola	mitochondrion	70.59	76.97
EES07372	Sorghum	cytosol, mitochondrion	67.65	76.44
CDY07845	Canola	plastid	69.79	75.87
Os02t0713400-01	Rice	extracellular, plasma membrane	66.84	75.53
TraesCS6A01G278000.1	Wheat	cytosol, mitochondrion	66.84	75.3
TraesCS6D01G258600.1	Wheat	extracellular, golgi, unclear	66.84	75.3
HORVU6Hr1G070120.1	Barley	cytosol, mitochondrion	66.58	75.23
PGSC0003DMT400035477	Potato	mitochondrion	73.53	74.93
TraesCS6B01G306300.1	Wheat	cytosol	66.31	74.7
Solyc02g082250.2.1	Tomato	mitochondrion	73.26	74.66
CDY66403	Canola	cytosol, nucleus, peroxisome, plastid	59.36	74.5
CDX74655	Canola	peroxisome, plastid	34.22	74.42
KRH76499	Soybean	nucleus	71.93	72.7
Zm00001d017823_P001	Maize	cytosol	67.91	72.16
KRH28954	Soybean	nucleus	70.59	70.97
TraesCS7B01G194200.1	Wheat	golgi	68.45	69.38
CDY05719	Canola	cytosol	33.16	69.27
EER89710	Sorghum	mitochondrion	68.72	69.27
TraesCS7D01G229100.1	Wheat	mitochondrion	67.91	68.83
Zm00001d037429_P001	Maize	mitochondrion	67.91	68.65
TraesCS7A01G225400.2	Wheat	mitochondrion	67.91	68.46
CDY72417	Canola	cytosol	13.9	68.42
CDY22142	Canola	cytosol	13.9	68.42
EES09948	Sorghum	mitochondrion	61.76	68.14
GSMUA_Achr9P27590_001	Banana	mitochondrion	64.17	67.8
Zm00001d053118_P001	Maize	cytosol	61.76	66.19
HORVU7Hr1G046890.1	Barley	plastid	67.65	65.21
KRH07823	Soybean	mitochondrion	67.65	64.21
CDY58054	Canola	cytosol	16.58	57.94
CDY70273	Canola	cytosol, peroxisome	18.72	54.69
CDY26805	Canola	vacuole	22.19	54.61
CDY30366	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	73.8	53.38
CDX74431	Canola	cytosol	20.86	53.06
CDY13332	Canola	plastid	35.29	48.35
CDY26807	Canola	cytosol, mitochondrion	74.87	42.36
CDY22534	Canola	plastid	45.45	33.27
CDY35405	Canola	plastid	45.45	33.27
Os04t0524136-00	Rice	plastid	17.38	32.66
CDX79923	Canola	mitochondrion, plastid	45.19	31.65
CDY23835	Canola	plastid	45.19	31.12

Protein Annotations

KEGG:00240+1.8.1.9	KEGG:00450+1.8.1.9	MapMan:10.5.2	Gene3D:3.50.50.60	GO:A0A078HY40	UniProt:A0A078HY40
EnsemblPlants:CDY41653	ProteinID:CDY41653	ProteinID:CDY41653.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00073320001	InterPro:IPR036188	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469
ScanProsite:PS00573	PANTHER:PTHR42863	PANTHER:PTHR42863:SF9	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905
TIGRFAMs:TIGR01292	InterPro:Thioredox_Rdtase	UniParc:UPI0004EE8B2E	SEG:seg	:	:

Description

BnaC03g62310DThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A078HY40]

Coordinates

chrLK032502:-:203995..206496

Molecular Weight (calculated)

39867.7 Da

IEP (calculated)

8.692

GRAVY (calculated)

-0.064

Length

374 amino acids

Sequence
(BLAST)

001: MNCMHRSRFL IKSLLSRART IARLGSTTLS QPQPPSLSST VMSRLETHNT RLCIVGSGPA AHTAAIYAAR AELKPLLFEG WMANDIAPGG QLTTTTDVEN
101: FPGFPEGILG AELTDKFRKQ SERFGTTIFT ETVTKVDFTS KPFKLFTESR AVLADAVILA TGAVAKRLSF PGSGEGSGGF WNRGISACAV CDGAAPIFRD
201: KPLAVIGGGD SAMEEANFLT KYGSKVYIIH RRDAFRASKI MQQRALANPK IDVIWNSTVV EAYGEWEGGV LGGLKVKNVV TGEVLDLKVS GLFFAIGHEP
301: ATKFLDGAVK LDSDGYVVTK PGSTQTSVAG VFAAGDVQDK KYKQAVTAAG TGCMAALDAE HYLQEIGSQQ GKSD

Best Arabidopsis Sequence Match ( AT4G35460.1 )
(BLAST)

001: MNCVSRLKCL ISKARSFARL GGESTLSQPP SLASAAFSSS AVMNGLETHN TRLCIVGSGP AAHTAAIYAA RAELKPLLFE GWMANDIAPG GQLTTTTDVE
101: NFPGFPEGIL GVELTDKFRK QSERFGTTIF TETVTKVDFS SKPFKLFTDS KAILADAVIL ATGAVAKRLS FVGSGEASGG FWNRGISACA VCDGAAPIFR
201: NKPLAVIGGG DSAMEEANFL TKYGSKVYII HRRDAFRASK IMQQRALSNP KIDVIWNSSV VEAYGDGERD VLGGLKVKNV VTGDVSDLKV SGLFFAIGHE
301: PATKFLDGGV ELDSDGYVVT KPGTTQTSVP GVFAAGDVQD KKYRQAITAA GTGCMAALDA EHYLQEIGSQ QGKSD

Arabidopsis Description

NTR1Thioredoxin reductase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q39243]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.