Factsheet for Zm00001d037429_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89710	Sorghum	mitochondrion	94.86	94.61
TraesCS7B01G194200.1	Wheat	golgi	88.11	88.35
TraesCS7A01G225400.2	Wheat	mitochondrion	88.11	87.87
TraesCS7D01G229100.1	Wheat	mitochondrion	87.57	87.8
HORVU7Hr1G046890.1	Barley	plastid	88.11	84.02
Zm00001d017823_P001	Maize	cytosol	77.84	81.82
CDY26806	Canola	cytosol, mitochondrion, peroxisome	27.3	79.53
GSMUA_Achr9P27590_001	Banana	mitochondrion	74.05	77.4
PGSC0003DMT400048037	Potato	cytosol	68.11	76.83
Solyc03g032000.2.1	Tomato	cytosol, extracellular	67.84	76.52
Zm00001d053118_P001	Maize	cytosol	71.08	75.36
Bra017711.1-P	Field mustard	cytosol	62.7	74.36
PGSC0003DMT400035477	Potato	mitochondrion	72.16	72.75
Solyc02g082250.2.1	Tomato	mitochondrion	71.62	72.21
KRH76499	Soybean	nucleus	70.54	70.54
VIT_04s0044g01750.t01	Wine grape	mitochondrion	71.35	70.4
CDY22142	Canola	cytosol	14.32	69.74
CDY72417	Canola	cytosol	14.32	69.74
CDY40633	Canola	mitochondrion	68.38	69.51
KRH28954	Soybean	nucleus	69.73	69.35
AT4G35460.1	Thale cress	mitochondrion, plastid	70.27	69.33
CDX72537	Canola	mitochondrion	67.3	69.17
Bra037274.1-P	Field mustard	mitochondrion	61.89	68.56
CDY41653	Canola	mitochondrion	68.65	67.91
CDY24812	Canola	mitochondrion	68.38	67.83
Bra010533.1-P	Field mustard	mitochondrion	64.05	67.33
CDY07845	Canola	plastid	62.16	66.86
CDY66403	Canola	cytosol, nucleus, peroxisome, plastid	53.78	66.78
Bra024516.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	52.43	66.44
CDX74655	Canola	peroxisome, plastid	30.81	66.28
AT2G17420.1	Thale cress	mitochondrion, plastid	68.38	66.06
CDY30367	Canola	mitochondrion	61.08	65.89
KRH07823	Soybean	mitochondrion	69.19	64.97
Bra025646.1-P	Field mustard	cytosol	13.51	64.1
VIT_05s0049g00110.t01	Wine grape	cytosol	17.57	61.32
CDY58054	Canola	cytosol	17.03	58.88
CDY05719	Canola	cytosol	28.11	58.1
Bra031685.1-P	Field mustard	cytosol	16.76	57.94
CDX74431	Canola	cytosol	20.0	50.34
CDY26805	Canola	vacuole	19.19	46.71
CDY30366	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	63.78	45.65
Bra037273.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	63.51	45.54
CDY70273	Canola	cytosol, peroxisome	15.41	44.53
CDY13332	Canola	plastid	31.62	42.86
CDY26807	Canola	cytosol, mitochondrion	65.95	36.91
Zm00001d022381_P016	Maize	plastid	48.65	32.55
Bra025645.1-P	Field mustard	cytosol	17.3	28.7

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	EntrezGene:100284045	Gene3D:3.50.50.60	ProteinID:AQK83970.1	UniProt:B4FMX6
EMBL:BT038464	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0055114	InterPro:IPR036188
PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573	PANTHER:PTHR42863	PANTHER:PTHR42863:SF9
InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	SignalP:SignalP-noTM	TIGRFAMs:TIGR01292	InterPro:Thioredox_Rdtase
UniParc:UPI00017B6CE4	EnsemblPlantsGene:Zm00001d037429	EnsemblPlants:Zm00001d037429_P001	EnsemblPlants:Zm00001d037429_T001	SEG:seg	:

Description

Thioredoxin reductase

Coordinates

chr6:-:125227720..125231316

Molecular Weight (calculated)

38524.7 Da

IEP (calculated)

6.624

GRAVY (calculated)

0.071

Length

370 amino acids

Sequence
(BLAST)

001: MSLCSKLFAL LRKSRALATS TAAAAAATTS ATASANGMEE AVAAAGPLRT RVCIIGSGPA AHTAAVYAAR AELKPVLFEG WLANDIAAGG QLTTTTDVEN
101: FPGFPDGILG ADLMDRCRAQ SLRFGTKILT ETVTTVDFSA RPFRVASDDT VVHADSVVVA TGAVARRLHF AGSDAFWNRG ISACAVCDGA APIFRNKPIA
201: VVGGGDSAME EANFLTKYGS QVYIIHRRSD FRASKIMQAR TLSNPKIKVV WNSEVVEAYG GADGGPLAGV KVKDVVTGEV SDLQVAGLFF AIGHEPATKF
301: LGGQLELDSD GYVVTKPGST HTSVQGVFAA GDVQDKKYRQ AITAAGSGCM AALDAEHYLQ EVGAQEGKTD

Best Arabidopsis Sequence Match ( AT2G17420.1 )
(BLAST)

001: MCWISMSQSR FIIKSLFSTA GGFLLGSALS NPPSLATAFS SSSSSSSAAA AVDMETHKTK VCIVGSGPAA HTAAIYASRA ELKPLLFEGW MANDIAPGGQ
101: LTTTTDVENF PGFPEGILGI DIVEKFRKQS ERFGTTIFTE TVNKVDFSSK PFKLFTDSRT VLADSVIIST GAVAKRLSFT GSGEGNGGFW NRGISACAVC
201: DGAAPIFRNK PLVVIGGGDS AMEEANFLTK YGSKVYIIHR RDTFRASKIM QQRALSNPKI EVIWNSAVVE AYGDENGRVL GGLKVKNVVT GDVSDLKVSG
301: LFFAIGHEPA TKFLDGQLEL DEDGYVVTKP GTTKTSVVGV FAAGDVQDKK YRQAITAAGT GCMAALDAEH YLQEIGSQEG KSD

Arabidopsis Description

NTR2Thioredoxin reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39242]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.